DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5885 and ssr3

DIOPT Version :9

Sequence 1:NP_001303317.1 Gene:CG5885 / 34314 FlyBaseID:FBgn0025700 Length:190 Species:Drosophila melanogaster
Sequence 2:NP_956347.1 Gene:ssr3 / 337190 ZFINID:ZDB-GENE-030131-9134 Length:185 Species:Danio rerio


Alignment Length:188 Identity:115/188 - (61%)
Similarity:150/188 - (79%) Gaps:10/188 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SGKQQKVQSSGFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAVPIWLFWRIHNMDLWPSSILF 67
            |.|||        .||:|||||||||:|.||:|||||||.||||:||||||||.:|||..|::|:
Zfish     6 SSKQQ--------SEEDLLLQDFSRNLSAKSTALFYGNALIVSAIPIWLFWRIWHMDLVQSAVLY 62

  Fly    68 VLVTAASTYLMATAYKNIKFQLKHKIAGRREEAVTREVNRQV--GDDKKVTRKEKDERILWKKNE 130
            .::|..||||:|.||||:||.||||:|.:||:||::||.|::  .|::|::||||||||||||||
Zfish    63 AVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNE 127

  Fly   131 VADYEATTFSIFYNNAIYLAVIIFISFFILKNSTPFINYIFSVGIASGALSLFSTSAQ 188
            |||||||||||||||.::|.::|..|||:|||..|.:|||.|:..:||.::|.||.::
Zfish   128 VADYEATTFSIFYNNTLFLLLVIVASFFLLKNFNPTVNYILSISASSGLIALLSTGSK 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5885NP_001303317.1 TRAP-gamma 17..186 CDD:284484 110/170 (65%)
ssr3NP_956347.1 TRAP-gamma 12..183 CDD:284484 110/170 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573536
Domainoid 1 1.000 234 1.000 Domainoid score I2326
eggNOG 1 0.900 - - E1_KOG4490
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5154
Inparanoid 1 1.050 235 1.000 Inparanoid score I3376
OMA 1 1.010 - - QHG55882
OrthoDB 1 1.010 - - D1450535at2759
OrthoFinder 1 1.000 - - FOG0006475
OrthoInspector 1 1.000 - - oto40748
orthoMCL 1 0.900 - - OOG6_107048
Panther 1 1.100 - - LDO PTHR13399
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4190
SonicParanoid 1 1.000 - - X5447
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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