DRSC/TRiP Functional Genomics Resources

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Protein Alignment yip2 and Acaa1a

DIOPT Version :10

Sequence 1:NP_523528.1 Gene:yip2 / 34313 FlyBaseID:FBgn0040064 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_036621.2 Gene:Acaa1a / 24157 RGDID:67379 Length:434 Species:Rattus norvegicus


Alignment Length:401 Identity:154/401 - (38%)
Similarity:214/401 - (53%) Gaps:20/401 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AATKGIYIVAAKRTAFGTFG-GSLKGINQTQLQTTAAKAALDAAGLKGEQVDTVIVGNVIASSST 66
            |:...:.:|..:||..|..| |..|.....:|.:....|.|....||.|.:..:.||||:...: 
  Rat    43 ASASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLEPGA- 106

  Fly    67 DGIYVPRHVGLNCGVPIEKPALGINRLCGSGFQSIVNGAQDILVGGAKIALTGGVENMSQSPFIA 131
             |..:.|......|:|...|...:||.|.||.|::.|.|..|..|...|.:..|||:||.|    
  Rat   107 -GAVMARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSLS---- 166

  Fly   132 RNVRFGTTLGASYNLEDALWAGLTDTYCKLPMALTAENLADQYKISRERVDEFSLLSQKNWEKGQ 196
                   ..|...|:...|........|.:||.:|:||:|:::.|||::.|.|:|.||:.....|
  Rat   167 -------NRGNPGNISSRLLESDKARDCLIPMGITSENVAERFGISRQKQDAFALASQQKAASAQ 224

  Fly   197 KEGAFNAEITPIKLKV---KG--KEVDFVVDEHPRPKTTIEGLNKLPSLFKKNGVVTAGTASGIC 256
            .:|.|.|||.|:...|   ||  |.:....||..||.||:|||.||...||..|..|||.:|.:.
  Rat   225 SKGCFRAEIVPVTTTVLDDKGDRKTITVSQDEGVRPSTTMEGLAKLKPAFKDGGSTTAGNSSQVS 289

  Fly   257 DGASAVIVASEEALKEYNLKPLARLVAFSFVGVKPEIMGIGPVPAIQNVLKVSGKKLEDIDLIEI 321
            |||:||::|.....:|..|..|..|.:::.|||.|:||||||..||...|:.:|..:.|||:.||
  Rat   290 DGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPAALQKAGLTVNDIDIFEI 354

  Fly   322 NEAFAAQTLACADALKLDTSKLNVNGGAIALGHPLGASGSRITGHLVHELQRK-KLKYGIGSACI 385
            |||||:|.|.|.:.|.:...|:|..|||||||||||.:|:|....|::||:|: :..||:.|.||
  Rat   355 NEAFASQALYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRAYGVVSMCI 419

  Fly   386 GGGQGIALLLE 396
            |.|.|.|.:.|
  Rat   420 GTGMGAAAVFE 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yip2NP_523528.1 thiolase 9..397 CDD:238383 153/395 (39%)
Acaa1aNP_036621.2 PLN02287 9..430 CDD:215161 153/399 (38%)
PTS2-type peroxisomal targeting signal. /evidence=ECO:0000269|PubMed:1680677 11..36
Blue background indicates that the domain is not in the aligned region.

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