Protein Alignment Srp54 and AT3G23900

DIOPT Version :9

• Sequence 1: NP_477347.1
• Gene: Srp54 / 34312
• FlyBaseID: FBgn0024285
• Length: 513
• Species: Drosophila melanogaster
• Sequence 2: NP_001189958.1
• Gene: AT3G23900 / 821973
• AraportID: AT3G23900
• Length: 987
• Species: Arabidopsis thaliana
• Alignment Length: 613
• Identity: 156/613 - (25%)
• Similarity: 213/613 - (34%)
• Gaps: 224/613 - (36%)

  Fly     4 GNTPRVIQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPVQSRICYVKYTDTTSVPVA 68
            |:..:.:||:|::|..|.:|::.||...|         |:.|.|......|.|::|:::.....|
plant   347 GDLKKFLQVSNLSPSLTTEQLRQLFSFCG---------TVVDCSITDSKHIAYIEYSNSEEATAA 402

  Fly    69 QHLTNTVFIDRALIVIPVLAIPEEYRALEMLKNGTIVPGLQKPDSKLPPEVINRIEGQLP---QQ 130
            ..|.||....|||.|....::|                  .||.|       |.....||   ||
plant   403 LALNNTEVFGRALNVEIAKSLP------------------HKPSS-------NNSSSSLPLMMQQ 442

  Fly   131 VIKTYDPKLVEFNLPEYPALPSFYDARKIEEIRRTIIVCDVKNEWRLDDLMECFQRAGEVKYARW 195
            .:                       |.:..:.::.|::.......:..:.....:.|.|:..||.
plant   443 AV-----------------------AMQQMQFQQAILMQQAVATQQAANRAATMKSATELAAARA 484

  Fly   196 AEKDNKTYCMIEFCEQTSIIHALRMQGQEFKGGHLSVYHSTYSITKPEAKSNEAAQAEIEEAMTI 260
            ||...|                                      .:|:...|:..:|:
plant   485 AEISRK--------------------------------------LRPDGVGNDEKEAD------- 504

  Fly   261 VKEAQSMISAAIDPVIGMLAKDKRRRSRSRSRS----RDRRTS--------RSRSHRSTS----R 309
                |...|.:..|.          ||||:|:|    |.||.|        |.|||||.|    :
plant   505 ----QKSRSPSKSPA----------RSRSKSKSPISYRRRRRSPTYSPPFRRPRSHRSRSPLRYQ 555

  Fly   310 RRS----RRSGSRERRSVSRSRR-SRSRGKHSSRSRSKRSRSRHRRSS-------SRSRR-SRSR 361
            |||    ||...|:.|.:|.||| .||...|||.||..||.|..:|.|       ||.|| |.||
plant   556 RRSTYEGRRRSYRDSRDISESRRYGRSDEHHSSSSRRSRSVSPKKRKSGQEDSELSRLRRDSSSR 620

  Fly   362 GGKHSRSSRSRGKRSRSR-------------HRRSTSRSRS----------SRSHGTGGGGSGNG 403
            |.|.|..:.||..|.|..             .||:.|||||          ||....    ..:.
plant   621 GEKKSSRAGSRSPRRRKEVKSTPRDDEENKVKRRTRSRSRSVEDSADIKDKSRDEEL----KHHK 681

  Fly   404 KRSRSRERSKKS----------HRSEKHSSRSPRSR------------------------SKRSS 434
            ||||||.|..:|          ...:||..|| |||                        |||.|
plant   682 KRSRSRSREDRSKTRDTSRNSDEAKQKHRQRS-RSRSLENDNGSHENVDVAQDNDLNSRHSKRRS 745

  Fly   435 PSPPPATGSKSRSSRSKDPVIVSAKSSRRR---DRSRTPETRKLKSISEDTEVKSSRS----SAD 492
            .|.......|.|..||:...:.:...|.|:   |..|...:|:.:|.|:..|.|.|.:    |.|
plant   746 KSLDEDYDMKERRGRSRSRSLETKNRSSRKNKLDEDRNTGSRRRRSRSKSVEGKRSYNKETRSRD 810

  Fly   493 SKSR-------KSVSVEKSDNMDISNSP 513
            .||:       :|.|.|.....||.:||
plant   811 KKSKRRSGRRSRSPSSEGKQGRDIRSSP 838

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Srp54	NP_477347.1	RRM_SRSF11_SREK1	9..85	CDD:240705	23/75 (31%)
		RRM2_SREK1	160..242	CDD:240706	8/81 (10%)
AT3G23900	NP_001189958.1	Filamin	88..186	CDD:279024
		IG_FLMN	91..193	CDD:214720
		RRM_SF	353..418	CDD:240668	22/73 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	127	1.000	Inparanoid score	I1917
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	LDO	PTHR32343
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	3.150