Protein Alignment Srp54 and CID9

DIOPT Version :10

• Sequence 1: NP_477347.1
• Gene: Srp54 / 34312
• FlyBaseID: FBgn0024285
• Length: 513
• Species: Drosophila melanogaster
• Sequence 2: NP_188063.1
• Gene: CID9 / 820668
• AraportID: AT3G14450
• Length: 327
• Species: Arabidopsis thaliana
• Alignment Length: 219
• Identity: 45/219 - (20%)
• Similarity: 71/219 - (32%)
• Gaps: 64/219 - (29%)

  Fly     8 RVIQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPVQSRICYVKYTDTTSVPVAQHLT 72
            |.:.|::|....|::.:..||.|.|::.:.|:......|     .|..:|::.|......|..|.
plant   141 RTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSV-----LRFAFVEFADDQGAHEALSLG 200

  Fly    73 NTVFIDRALIVIPVLAIPEEYRALEMLKNGTIVPGLQKPDSKLPPEVINRIEGQLPQQVIKTYDP 137
            .|:     |...||..:|.:          |.:
plant   201 GTM-----LGFYPVRVLPSK----------TAI-------------------------------- 218

  Fly   138 KLVEFNLPEYPA-LPSFYDARKIEEIRRTIIVCDVKNEWRLDDLMECFQRA-GEVKYARWA--EK 198
                  ||..|. ||...|.|  |...|||...::..:....|:...|:.| |||...|..  :.
plant   219 ------LPVNPTFLPRSEDER--EMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQL 275

  Fly   199 DNKTYCMIEFCEQTSIIHALRMQG 222
            .:.....:||....|.:.||...|
plant   276 HSTRIAFVEFALADSALSALNCSG 299

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Srp54	NP_477347.1	RRM_SRSF11_SREK1	9..85	CDD:409704	16/75 (21%)
		RRM2_SREK1	160..242	CDD:409705	17/66 (26%)
CID9	NP_188063.1	RRM1_CID8_like	139..218	CDD:409892	21/96 (22%)
		RRM2_CID8_like	234..315	CDD:409893	17/66 (26%)