Protein Alignment Srp54 and Tro

DIOPT Version :10

• Sequence 1: NP_477347.1
• Gene: Srp54 / 34312
• FlyBaseID: FBgn0024285
• Length: 513
• Species: Drosophila melanogaster
• Sequence 2: NP_001002272.1
• Gene: Tro / 56191
• MGIID: 1928994
• Length: 2087
• Species: Mus musculus
• Alignment Length: 284
• Identity: 59/284 - (20%)
• Similarity: 116/284 - (40%)
• Gaps: 38/284 - (13%)

  Fly   240 TKPEAKSNEAAQAEIEEAMTIVKEAQSMISAAIDPVI--GMLAKDK------RRRSRSRSRSRDR 296
            :|..:.:|.||...:..|..|     |:.|||...|.  |..||:.      ...:||:..|:.:
Mouse   176 SKKASTANNAANKTVPSAAEI-----SLASAATHTVTTQGQAAKETGSIQTIAATARSKKNSKGK 235

  Fly   297 RTSRSRSHRSTSRRRSRRSGSRERRSVSRSRRSRSRGKHSSRSRSKRSRSRHRRSSSRSRRSRSR 361
            ||....::.......:..:.....|.:..|.|..........:.|:::.:.:|::.:.||::.:.
Mouse   236 RTPAKTTNTDNEYVEASNAIEASSRQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEAS 300

  Fly   362 GGKHSRSSRSRGKRSR-----SRHRRSTSRSRSSRSHGTGGGGSGNGKRSRSRERSKK----SHR 417
            ..:...|:|..|..:|     :|...:::|...:.:...|.........||..|.|.:    |:|
Mouse   301 SRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGASNRQTEVSSRQIEASNRQIGASNR 365

  Fly   418 SEKHSSRSPRSRSKRSSPSPPPATGSKSRSSRSKDPVIVSAKSSRRRDRSRTPETRKLKSISEDT 482
            ..:.|:|. ...|.|.:.:.....|:.:|.:.:         |:|:.|.|    .|:.::.|..|
Mouse   366 QTEASNRQ-IGASNRQTEASNRQIGASNRQTDA---------SNRQTDAS----NRQTEASSRQT 416

  Fly   483 EVKSSRSSADSKSRKSVS--VEKS 504
            |..|.::.|.|:..::.|  :|.|
Mouse   417 EASSRQTEASSRQTEASSRQIEAS 440

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Srp54	NP_477347.1	RRM_SRSF11_SREK1	9..85	CDD:409704
		RRM2_SREK1	160..242	CDD:409705	0/1 (0%)
Tro	NP_001002272.1	growth_prot_Scy	<97..>524	CDD:469371	59/284 (21%)
		MscS_porin	268..>445	CDD:432790	37/187 (20%)
		MAGE	596..756	CDD:426270
		FhaB	859..2081	CDD:442443