DRSC/TRiP Functional Genomics Resources

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Protein Alignment Srp54 and srek1

DIOPT Version :9

Sequence 1:NP_477347.1 Gene:Srp54 / 34312 FlyBaseID:FBgn0024285 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_001003613.2 Gene:srek1 / 445219 ZFINID:ZDB-GENE-040801-132 Length:515 Species:Danio rerio


Alignment Length:553 Identity:201/553 - (36%)
Similarity:272/553 - (49%) Gaps:88/553 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAGGNTPRVIQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPVQSRICYVKYTDTTSV 65
            |:|.....|||:||::...:.|||:||||.:|.|:|:||||. .:......|::||:||.:.:||
Zfish     1 MSGMPGTNVIQITNLSAAVSSDQMRTLFGFLGDIDELRLYPP-DNAPLSFSSKVCYIKYREPSSV 64

  Fly    66 PVAQHLTNTVFIDRALIVIPVL--AIPEEYRALEMLKNGTIVPGLQKPDSKLP---PEVI-NRIE 124
            .|||||||||||||||||:|..  .||||.:||.:|...|.|..|......||   |..: ||  
Zfish    65 GVAQHLTNTVFIDRALIVVPCAEGKIPEEAKALSLLAPATPVASLMSGGGLLPIPSPSTLQNR-- 127

  Fly   125 GQLPQQ---VIK-TYDPKLVEFN-LPEYPALPSFYDARKIEEIRRTIIVCDVKNE-WRLDDLMEC 183
             .||..   |:| :.|..:...: :...|.|....|..|::|||||:.|.::.:: ...|.|::.
Zfish   128 -SLPLANLGVLKSSLDTSVATLSAVSAQPPLMGNVDPSKVDEIRRTVYVGNLNSQSTTADQLLKF 191

  Fly   184 FQRAGEVKYARWA--EKDNKTYCMIEFCEQTSIIHALRMQGQEFKGGHLSVYHSTYSITKPEAKS 246
            |::.|:||:.|.|  |.....:..:||.:|.|:..||...|..|....|.:.||..:|.||...:
Zfish   192 FKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHSNNAIVKPPELT 256

  Fly   247 NEAAQAEIEEAMTIVKEAQSMISAAIDPVIGMLAKDKRRRSRSRSRSRDRRTSRSRSHRSTSRRR 311
            .:||..|:|:.|..|:||||.|:|||:|           .:...|.||.|.:.||||| |.|...
Zfish   257 PQAAAKELEDVMKKVREAQSTIAAAIEP-----------ENELPSSSRSRHSRRSRSH-SCSPSN 309

  Fly   312 SRRSGSRERRSVSRSRRSRSRGKHSSRSRSKRSRSRHRRSSSRSRRSRSRGGKHSRSSRSR---- 372
            |||..||.|.....|:|||.|...|..|..:.||||.||.|  ..||.|||.:..:.|:.|    
Zfish   310 SRRKRSRSRHRGHPSKRSRQRFNDSCGSHRRHSRSRERRRS--QSRSHSRGRRKDKDSKGRKDDD 372

  Fly   373 --GKRSRSRHRRSTSR----SRSSRSHGTGGGGSGNGKRSRSRERSKKSHRSEKHSSRSPRSRSK 431
              .||.|.:..||..:    ||.|||     ...|:.|||||             .|||||.|::
Zfish   373 WDEKRLRDKTGRSPPKCYVGSRRSRS-----TSRGHKKRSRS-------------PSRSPRQRAR 419

  Fly   432 RSSPSPPPATGSKSRSSRSK--DPVIVSAKSSRRRDRSRTPETRKLKSISE----------DTEV 484
                ||.|....|....|.|  |.....|:||..|.:||..|.:...|..|          |:|:
Zfish   420 ----SPTPTKRGKREKKREKGWDSSRERAESSAFRRKSRDSEYKAKPSQRERVYEQMEHEYDSEM 480

  Fly   485 KSSRSS-ADSKS---------RKSVSVEKSDNM 507
            ..|.|. :|.:|         |.|.:.|  ||:
Zfish   481 DGSGSMVSDDRSPPAHLNGSYRSSYAEE--DNL 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Srp54NP_477347.1 RRM_SRSF11_SREK1 9..85 CDD:240705 43/75 (57%)
RRM2_SREK1 160..242 CDD:240706 27/84 (32%)
srek1NP_001003613.2 RRM1_SREK1 9..88 CDD:240963 44/79 (56%)
RRM2_SREK1 167..252 CDD:240706 27/84 (32%)
RRM <170..>248 CDD:223796 24/77 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581692
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4676
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 246 1.000 Inparanoid score I3259
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003613
OrthoInspector 1 1.000 - - otm26485
orthoMCL 1 0.900 - - OOG6_105433
Panther 1 1.100 - - LDO PTHR32343
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5511
SonicParanoid 1 1.000 - - X2488
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.780

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