DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Etl1 and INO80

DIOPT Version :10

Sequence 1:NP_609320.2 Gene:Etl1 / 34311 FlyBaseID:FBgn0032157 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_001190117.1 Gene:INO80 / 824897 AraportID:AT3G57300 Length:1540 Species:Arabidopsis thaliana


Alignment Length:968 Identity:243/968 - (25%)
Similarity:375/968 - (38%) Gaps:381/968 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 VKQSKDQVYD---SDDSDSEMSTKM-TGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVRPF 219
            :||:  ::|.   .:.:||..|..: .|....:.:.:.|.|..|...|:...|            
plant   459 IKQT--ELYSHFMQNKTDSNPSEALPIGDENPIDEVLPETSAAEPSEVEDPEE------------ 509

  Fly   220 SDWSDLRQKLESIRMSGDLLNYAQELINKQNTVAAI-------LSKCNNMVSRL-EKAISNGAGI 276
               ::|::|         :|..||:.::||..:...       |.:.:.|...| :.::|..:.|
plant   510 ---AELKEK---------VLRAAQDAVSKQKQITDAFDTEYMKLRQTSEMEGPLNDISVSGSSNI 562

  Fly   277 -------------VEQPKLLSSGLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFL 328
                         |:.|:|....|:  :||:.||.||...::|.:|||||||||||||||.:|||
plant   563 DLHNPSTMPVTSTVQTPELFKGTLK--EYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFL 625

  Fly   329 AYLKENGLSQAAHLIVVPSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRG------------ 381
            |:|.|........|:|.|:|.|:||..||||:||:|....|.|...||..:|.            
plant   626 AHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRVMFFST 690

  Fly   382 -----------------------RF--AKDGFTGFDVLLTTYHIVGSTPEERKMFRVCKLDYVIF 421
                                   ||  ..|...||.:|:|:|.::.:   :.|.||..|..|::.
plant   691 WIISFDPWAVRQICICKRACNVVRFQTLSDMDAGFHILITSYQLLVT---DEKYFRRVKWQYMVL 752

  Fly   422 DEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMP----------KFFAKS 476
            |||..:|:.::.|:..|::.|.|.|:||||||:|||:.||.:||.|:||          ::|:|.
plant   753 DEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKG 817

  Fly   477 IEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKPFVLRRLKKDVLKNLPKKLSLVEKVPMS 541
            ||:    .|:.|         ....|.|:.|...|:|||:|||:||||:..|..|..:.....:|
plant   818 IEN----HAEHG---------GTLNEHQLNRLHAILKPFMLRRVKKDVVSELTTKTEVTVHCKLS 869

  Fly   542 SQQKIYYH------ELVDYYSNNKGEVCSSSERAGIAIMMEMRRIANHPLL-------------- 586
            |:|:.:|.      .|.:.:.:|:|:.........:.|::::|::.|||.|              
plant   870 SRQQAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPELFERNEGSSYLYFGV 934

  Fly   587 ---------------------------------------------------------MRHY---- 590
                                                                     ::|:    
plant   935 TSNSLLPHPFGELEDVHYSGGQNPIIYKIPKLLHQEVLQNSETFCSSVGRGISRESFLKHFNIYS 999

  Fly   591 ----------------------------------------------------------------- 590
                                                                             
plant  1000 PEYILKSIFPSDSGVDQVVSGSGAFGFSRLMDLSPSEVGYLALCSVAERLLFSILRWERQFLDEL 1064

  Fly   591 -----------FTDANLR-------------------GFSKRLANA------------------- 606
                       .:|.|:.                   .|.||..:.                   
plant  1065 VNSLMESKDGDLSDNNIERVKTKAVTRMLLMPSKVETNFQKRRLSTGPTRPSFEALVISHQDRFL 1129

  Fly   607 SSFKKTNEQYIF-----------------------EEL--------------------------- 621
            ||.|..:..|.:                       |||                           
plant  1130 SSIKLLHSAYTYIPKARAPPVSIHCSDRNSAYRVTEELHQPWLKRLLIGFARTSEANGPRKPNSF 1194

  Fly   622 -----------------AVMSDFQVYQMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGH 669
                             |:....:::......:.:|   |..|:.||||...||.||.:|:|..|
plant  1195 PHPLIQEIDSELPVVQPALQLTHRIFGSCPPMQSFD---PAKLLTDSGKLQTLDILLKRLRAGNH 1256

  Fly   670 RVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGI 734
            |||||:|.|.||:|:|:|:..||:.:.||||::.:..|:|::.||.....||||||||:|||:||
plant  1257 RVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI 1321

  Fly   735 NLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEK 792
            |||||||.:.::.|:||..|.||.||.||:||.:.||:||||.:.|:||.||..|.:|
plant  1322 NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQK 1379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Etl1NP_609320.2 ComEA <192..233 CDD:441164 7/40 (18%)
HepA <276..795 CDD:440319 220/839 (26%)
INO80NP_001190117.1 DBINO 345..476 CDD:464024 4/18 (22%)
DEAD-like_helicase_N 586..847 CDD:475120 100/278 (36%)
SF2_C_SNF 1231..1363 CDD:350180 71/131 (54%)
PRK07735 <1411..>1513 CDD:236081
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.