DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Etl1 and CHR40

DIOPT Version :10

Sequence 1:NP_609320.2 Gene:Etl1 / 34311 FlyBaseID:FBgn0032157 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_189077.1 Gene:CHR40 / 822023 AraportID:AT3G24340 Length:1132 Species:Arabidopsis thaliana


Alignment Length:1000 Identity:206/1000 - (20%)
Similarity:360/1000 - (36%) Gaps:263/1000 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDSTVAASASASASSSAKSSLSDLRQFRINKNASSVVASPSRTERVPGKKRIQVMADSDSDGND 65
            :||..|:.|   |:|...:..|.:|             .:.|| |.|.|:.|....:|.|.|.||
plant   232 VSDEVVSLS---SSSDDEEDPLEEL-------------GTDSR-EEVSGEDRDSGESDMDEDAND 279

  Fly    66 SQTP------------KKTKLELTVKEKEE---RYMAAAKISP-----------------HFDTM 98
            |.:.            :.:..:....|.||   |..|..:.:|                 :||.:
plant   280 SDSSDYVGESSDSSDVESSDSDFVCSEDEEGGTRDDATCEKNPSEKVYHHKKSRTFRRKHNFDVI 344

  Fly    99 -AIQESLSRT---------NWDVAASV-----RYLRENCKPK--GHNGPLAKSKL-----KPRSN 141
             .:.:|:..:         :||..|.|     ..:||:...|  .|..|..:...     |...|
plant   345 NLLAKSMLESKDVFKEDIFSWDKIAEVDSREDPVVRESSSEKVNEHGKPRERRSFHRVREKNHLN 409

  Fly   142 GIS--GG----------NFSDNDHSD-------DDDV---KQSKDQVYDSDDSDSEMSTKMTGQR 184
            |.|  ||          |:|..|...       ::.|   |..:::..||...|..::..:.|..
plant   410 GESFYGGEKLCDGEETINYSTEDSPPLNLRFGCEEPVLIEKTEEEKELDSLWEDMNVALTLEGMH 474

  Fly   185 KKV---------------FQFMNEASL---------IELQSVKTLSEKKALAIIDVRPFSD--WS 223
            ...               |...:|..|         :|::.:....:|...::.|.:..||  ..
plant   475 SSTPDKNGDMLCSKGTHDFVLDDEIGLKCVHCAYVAVEIKDISPAMDKYRPSVNDNKKCSDRKGD 539

  Fly   224 DLRQKLESIRMSGDLLNYAQELINKQNTVAAILSKCNNMV-----SRLEKAISNGAGIVEQPKLL 283
            .|..:||.  .:.|..::...|.|.:.||...:....:.:     ...|....|.||..:..:|.
plant   540 PLPNRLEF--DASDPSSFVAPLDNIEGTVWQYVPGIKDTLYPHQQEGFEFIWKNLAGTTKINELN 602

  Fly   284 SSGLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFL-AYLKENGLSQAAHLIVVPS 347
            |.|::       |.....:.||          .|.|||...:.|| :|||.  ...:..:::.|:
plant   603 SVGVK-------GSGGCIISHK----------AGTGKTRLTVVFLQSYLKR--FPNSHPMVIAPA 648

  Fly   348 STLDNWEAEISRWCPELVVEKYH-------GSQDER--RRMRGR--------------FAKDGFT 389
            :.:..||.|:.:|  .:.:..|:       |.:|..  .|:.|.              :.:....
plant   649 TLMRTWEDEVRKW--NVNIPFYNMNSLQLSGYEDAEAVSRLEGNRHHNSIRMVKLVSWWKQKSIL 711

  Fly   390 GFDVLLTTYHIVGSTPEERKMFRVCKLD---YVIFDEAHMLKNMTTQRYANLITINARMRILLTG 451
            |....|..........|..::||...::   .::.||.|..:|.::..:..|..:....||.|:|
plant   712 GISYPLYEKLAANKNTEGMQVFRRMLVELPGLLVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSG 776

  Fly   452 TPLQNNLLELISLLCFVMP---KFFAKSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMK 513
            |..|||..||.::||...|   ...:..|.::     .|...:|:...|:  :|.:|...|.::.
plant   777 TLFQNNFKELSNVLCLARPADKDTISSRIHEL-----SKCSQEGEHGRVN--EENRIVDLKAMIA 834

  Fly   514 PFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELVDYYSNNKGEVCSSSERAGIAIMMEMR 578
            .||.......:.::||.....|..:....|||    :::|....::.......:.:.:::...:.
plant   835 HFVHVHEGTILQESLPGLRDCVVVLNPPFQQK----KILDRIDTSQNTFEFEHKLSAVSVHPSLY 895

  Fly   579 RIANHPLLMRHYFTDANLRGFSKRLANASSFKKTNEQYIFEELAVMSDFQVYQMMNKHEFYDVK- 642
            ...| |.............|..|||           :..:|| .|.:.|.:       :|..:. 
plant   896 LCCN-PTKKEDLVIGPATLGTLKRL-----------RLKYEE-GVKTKFLI-------DFIRISG 940

  Fly   643 -IPDNLICDSGKFLYLDTL---LPKLKA-----EGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRL 698
             :.:.::..|   .|:|||   :.:|.|     ||.::||                        :
plant   941 TVKEKVLVYS---QYIDTLKLIMEQLIAECDWTEGEQILL------------------------M 978

  Fly   699 DGATAVNVRQDLITDFNGDDS-IFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCH 762
            .|......||.:|.:||..|| ..|.|.||||...||:|..|...||.|:.:||..:.||..|..
plant   979 HGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWNPSVESQAISRAF 1043

  Fly   763 RMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDI--TSNEKGE------VHEQRCVVKLLTT 819
            |:||:|.|.||.|:.:.|.|........||.::.:.:  ::|||.:      |.:.|.:.:::  
plant  1044 RIGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVFSSTNEKDKPINNEVVSKDRILDEMV-- 1106

  Fly   820 ALGLDKDQEEQLNNSLNNSIASPAK 844
                   :.|:|.:.....:..|.|
plant  1107 -------RHEKLKHIFEKILYHPKK 1124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Etl1NP_609320.2 ComEA <192..233 CDD:441164 10/51 (20%)
HepA <276..795 CDD:440319 124/559 (22%)
CHR40NP_189077.1 HepA <571..1082 CDD:440319 128/589 (22%)
DEXHc_ATRX-like 577..830 CDD:350765 58/280 (21%)

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