DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Etl1 and chd1l

DIOPT Version :10

Sequence 1:NP_609320.2 Gene:Etl1 / 34311 FlyBaseID:FBgn0032157 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_956607.1 Gene:chd1l / 393283 ZFINID:ZDB-GENE-040426-892 Length:1026 Species:Danio rerio


Alignment Length:533 Identity:188/533 - (35%)
Similarity:278/533 - (52%) Gaps:81/533 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 LQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAY----LKENGLSQAAHLIVVPS 347
            :.|..||:.|:.||::..|.:...||.||||||||.|.|:.|||    ||.||    ..|::.|.
Zfish    33 IHLRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLAYARGSLKMNG----PFLVLCPL 93

  Fly   348 STLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLLTTYHIVGSTPEERKMFR 412
            :.|:||..|:.|:||.|.|..|.|.:::|..::.....|  ..|.||||||.:   ..::.:..:
Zfish    94 AVLENWRQELERFCPSLSVICYTGDKEKRAELQQNLKSD--PRFHVLLTTYEM---CLKDARYLK 153

  Fly   413 VCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMPK-FFAKS 476
            ..|...::.||||.|||..:..:..|.......|:||||||:||||.|:.|||.|:.|. |..::
Zfish   154 SWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVFLPEA 218

  Fly   477 IEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKPFVLRRLKKDVLKNLPKKLSLVEKVPMS 541
            :||..:.:|.........||:.|           :::||:|||:|.:|...||||..||....:|
Zfish   219 VEDFVNAYADIQTEPALVDELHQ-----------VLQPFLLRRVKAEVAAELPKKTELVVFHGLS 272

  Fly   542 SQQKIYYHEL----VDYYSNNKGEVCSSSERAGIAIMMEMRRIANHPLLMRHYFTDANLRGFSKR 602
            :.||.||..:    :|.:..::     |::...:.::|::|:..:||                  
Zfish   273 ALQKRYYKAILMRDLDAFRTDQ-----STKTRLLNVLMQLRKCVDHP------------------ 314

  Fly   603 LANASSFKKTNEQYIFEELAVMSDFQVYQMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAE 667
                         |:|:.:               |....::.::|:..|||...||::|..|:..
Zfish   315 -------------YLFDGV---------------EPEPFEMGEHLVEASGKLSLLDSMLAYLQEG 351

  Fly   668 GHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGV 732
            ||.||||||.|.||||:::||..|.:.:.||||:.....|...|.:|:..| :|:||||||||||
Zfish   352 GHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFSTKD-VFIFLLSTKAGGV 415

  Fly   733 GINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEK 797
            |:|||||||.:..|.||||.||.||..|.||:||.|||.:.||:...||||.|...|..||:|..
Zfish   416 GMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTD 480

  Fly   798 DITSNEKGEVHEQ 810
            .:....:..:.:|
Zfish   481 TVIEEGRFSLLDQ 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Etl1NP_609320.2 ComEA <192..233 CDD:441164
HepA <276..795 CDD:440319 186/516 (36%)
chd1lNP_956607.1 PLN03142 35..>547 CDD:215601 188/531 (35%)
DEAH box 163..166 2/2 (100%)
Regulatory linker segment (RLS). /evidence=ECO:0000250|UniProtKB:Q86WJ1 594..628
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 606..655
Required for ATPase activity. /evidence=ECO:0000250|UniProtKB:Q86WJ1 608..666
Macro_Poa1p-like_SNF2 709..859 CDD:394880
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 877..929
BRCT 931..1016 CDD:469589
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.