DRSC/TRiP Functional Genomics Resources

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Protein Alignment Etl1 and chd3

DIOPT Version :10

Sequence 1:NP_609320.2 Gene:Etl1 / 34311 FlyBaseID:FBgn0032157 Length:844 Species:Drosophila melanogaster
Sequence 2:XP_002940874.3 Gene:chd3 / 100216299 XenbaseID:XB-GENE-1008908 Length:2036 Species:Xenopus tropicalis


Alignment Length:598 Identity:206/598 - (34%)
Similarity:304/598 - (50%) Gaps:109/598 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 QPKLLSS-GLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQAAHL 342
            ||:.:|| |..|..||:.|||||.....|..:.|||||||||||||.|.||..|.:.|.:|...|
 Frog   744 QPQFVSSTGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTQGPFL 808

  Fly   343 IVVPSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMR-GRFA---------KDGF-------TG 390
            :..|.||:.|||.|...|.|:..|..|.|.:|.|..:| ..|:         |..|       ..
 Frog   809 VSAPLSTIINWEREFQMWAPDFYVVTYTGDKDSRSVIRENEFSYQDNVMKGGKKAFKMKAQAQVK 873

  Fly   391 FDVLLTTYHIVGSTPEERKMFRV---CKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGT 452
            |.||||:|.:|  |.::..:..:   |    ::.||||.|||..::.:..|.......::|||||
 Frog   874 FHVLLTSYELV--TIDQAALGSIRWAC----LVVDEAHRLKNNQSKFFRVLNGYQIDYKLLLTGT 932

  Fly   453 PLQNNLLELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQF-QETQIQRAKRIMKPFV 516
            ||||||.||..||.|:.|:.|              ...||..:|.:.. :|.||::...::.|.:
 Frog   933 PLQNNLEELFHLLNFLTPERF--------------NNLDGFLEEFADISKEDQIKKLHDLLGPHL 983

  Fly   517 LRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELV--DYYS-NNKGEVCSSSERAGIAIMMEMR 578
            |||:|.||.||:|.|..|:.:|.:|..||.||..::  ::.: |::|   ..::.:.:.|||:::
 Frog   984 LRRMKADVFKNMPAKTELIVRVELSPMQKKYYKFILTRNFEALNSRG---GGNQVSLLNIMMDLK 1045

  Fly   579 RIANHPLLMRHYFTDANLRGFSKRLANASSFKKTNEQYIFEELAVMSDFQVYQMMNKHEFYDVKI 643
            :..|||                               |:|...::.|.               |:
 Frog  1046 KCCNHP-------------------------------YLFPAASLESP---------------KL 1064

  Fly   644 PD------NLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGAT 702
            |.      :|:..|||.|.|..:|.||..:|||||:|||.|.||||:|::|....:.:.|:||..
 Frog  1065 PSGAYEGGSLVKASGKLLLLHKMLRKLNEQGHRVLIFSQMTKMLDILEDFLDFEGYKYERIDGGI 1129

  Fly   703 AVNVRQDLITDFNGDDS-IFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQ 766
            ...:||:.|..||...: .|.|||||:|||:||||..|||.:|:|.|:||:||.||..|.||:||
 Frog  1130 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ 1194

  Fly   767 QRPVTIYRLISESTIEEGILMAAEEKLKLEKDIT----SNEKGEVHEQRC--VVKLLTTALGLDK 825
            ...|.|||.::.:::||.|...|:.|:.|...:.    .::.|.:.:|..  ::|..|..  |.|
 Frog  1195 ANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEE--LFK 1257

  Fly   826 DQEEQLNNSLNNS 838
            |:.|..:|..::|
 Frog  1258 DEIEAGDNKEDDS 1270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Etl1NP_609320.2 ComEA <192..233 CDD:441164
HepA <276..795 CDD:440319 195/547 (36%)
chd3XP_002940874.3 CHDNT 195..250 CDD:462357
PHD1_CHD_II 403..445 CDD:277006
PHD2_CHD_II 479..521 CDD:277007
CD1_tandem_CHD3-4_like 526..604 CDD:349314
CD2_tandem_CHD3-4_like 647..701 CDD:349309
PLN03142 738..>1293 CDD:215601 206/598 (34%)
DEXHc_CHD3 755..986 CDD:350813 90/250 (36%)
DUF1087 1327..1377 CDD:461922
CHDII_SANT-like 1398..1537 CDD:461920
PspC_subgroup_2 <1535..1750 CDD:468202
CHDCT2 1781..1926 CDD:462358
Blue background indicates that the domain is not in the aligned region.

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