DRSC/TRiP Functional Genomics Resources

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Protein Alignment Etl1 and chd8

DIOPT Version :10

Sequence 1:NP_609320.2 Gene:Etl1 / 34311 FlyBaseID:FBgn0032157 Length:844 Species:Drosophila melanogaster
Sequence 2:XP_012812626.1 Gene:chd8 / 100192376 XenbaseID:XB-GENE-966847 Length:2335 Species:Xenopus tropicalis


Alignment Length:144 Identity:32/144 - (22%)
Similarity:51/144 - (35%) Gaps:37/144 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 GGVVFGPRPKDWSIKINRKEKKLAISTALSSAASA-------EGGAIVVEEFGEKF--------- 184
            ||.:|..|         |:...|...:.|||..|.       |.|:.:::..||.|         
 Frog    20 GGCLFTAR---------RESLCLFKDSMLSSMFSGRFPLKLDESGSCIIDRNGELFKYLLDYLHG 75

  Fly   185 --EKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRN-IGTLRMLTPRTLN--LFDILNA 244
              :.|:.:....|:|       |:|.:..|....|:.....| :.|..:.:.|...  |||..:.
 Frog    76 EVQIPEDEQTRIALQ-------EEADYFGISYPYNLTYHLANEMETYSLKSNRVKKGVLFDFCDL 133

  Fly   245 DKLVLTPAAVEFLN 258
            ..|..|...|..|:
 Frog   134 YNLFCTKPIVXVLH 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Etl1NP_609320.2 ComEA <192..233 CDD:441164 8/41 (20%)
HepA <276..795 CDD:440319
chd8XP_012812626.1 Med15 35..>363 CDD:312941 26/120 (22%)
CD1_tandem_CHD5-9_like 582..647 CDD:349315
CD2_tandem_CHD5-9_like 665..723 CDD:349310
PLN03142 754..>1357 CDD:215601
DEXHc_CHD8 755..976 CDD:350818
BRK 2122..2165 CDD:462196
Blue background indicates that the domain is not in the aligned region.

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