DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS2 and AT1G58983

DIOPT Version :9

Sequence 1:NP_001260303.1 Gene:RpS2 / 34309 FlyBaseID:FBgn0004867 Length:267 Species:Drosophila melanogaster
Sequence 2:NP_564737.1 Gene:AT1G58983 / 842229 AraportID:AT1G58983 Length:284 Species:Arabidopsis thaliana


Alignment Length:258 Identity:184/258 - (71%)
Similarity:214/258 - (82%) Gaps:10/258 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RSGFRGGFGS--RGGRGGRGRGRGRWARGRGK------EDSKEWVPVTKLGRLVREGKIKSLEEI 64
            |.|.||.||.  .||||| ||||.|..||||:      |::| |||||||||||.:.||..||:|
plant    12 RGGDRGDFGRGFGGGRGG-GRGRDRGPRGRGRRGGRASEETK-WVPVTKLGRLVADNKITKLEQI 74

  Fly    65 YLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 129
            ||:|||:||::|||..:|.:|||||:|||||||||||||||||||||.:||.|||:|||||||||
plant    75 YLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139

  Fly   130 VATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPK 194
            |||||||||||||||||||||||||||||||||||||||||||||:||::|||||:|||:|.|||
plant   140 VATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPK 204

  Fly   195 KLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFLS 257
            |:|..|||:|.:||:||||.|||||.|||:..:.|||.:|||:.|||.....:|||.::||||
plant   205 KVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLS 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS2NP_001260303.1 uS5_euk_arch 37..245 CDD:273398 157/213 (74%)
Ribosomal_S5 85..149 CDD:278748 58/63 (92%)
Ribosomal_S5_C 168..235 CDD:281681 44/66 (67%)
AT1G58983NP_564737.1 PTZ00070 47..271 CDD:240255 164/222 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 123 1.000 Domainoid score I1828
eggNOG 1 0.900 - - E1_COG0098
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37714
Inparanoid 1 1.050 377 1.000 Inparanoid score I546
OMA 1 1.010 - - QHG62203
OrthoDB 1 1.010 - - D1197354at2759
OrthoFinder 1 1.000 - - FOG0001382
OrthoInspector 1 1.000 - - otm2824
orthoMCL 1 0.900 - - OOG6_100429
Panther 1 1.100 - - O PTHR13718
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X871
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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