DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS2 and AT2G41840

DIOPT Version :9

Sequence 1:NP_001260303.1 Gene:RpS2 / 34309 FlyBaseID:FBgn0004867 Length:267 Species:Drosophila melanogaster
Sequence 2:NP_181715.1 Gene:AT2G41840 / 818784 AraportID:AT2G41840 Length:285 Species:Arabidopsis thaliana


Alignment Length:269 Identity:189/269 - (70%)
Similarity:217/269 - (80%) Gaps:16/269 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RSGFRG----GFGSRGGRGGRGRGRGRWARG--RGKEDSKE--WVPVTKLGRLVREGKIKSLEEI 64
            |.|.||    |||.|||||.|| ||||..||  ||...|:|  |||||||||||..|.||.:|:|
plant    12 RGGERGDFGRGFGGRGGRGDRG-GRGRGGRGGRRGGRASEEEKWVPVTKLGRLVAAGHIKQIEQI 75

  Fly    65 YLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 129
            ||:|||:||::|||..:|.:|||||:|||||||||||||||||||||.:||.|||:|||||||||
plant    76 YLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 140

  Fly   130 VATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPK 194
            |||||||||||||||||||||||||||||||||||||||||||||:||::|||||:|||:|.|||
plant   141 VATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPK 205

  Fly   195 KLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFL--- 256
            |:|..|||:|.:||:||||.|||||.|||:..:.|||.:|||:.|||.....:|||.::|||   
plant   206 KVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASK 270

  Fly   257 ----SKPTP 261
                |||.|
plant   271 ALSTSKPDP 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS2NP_001260303.1 uS5_euk_arch 37..245 CDD:273398 157/209 (75%)
Ribosomal_S5 85..149 CDD:278748 58/63 (92%)
Ribosomal_S5_C 168..235 CDD:281681 44/66 (67%)
AT2G41840NP_181715.1 PTZ00070 48..271 CDD:240255 163/222 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 123 1.000 Domainoid score I1828
eggNOG 1 0.900 - - E1_COG0098
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37714
Inparanoid 1 1.050 377 1.000 Inparanoid score I546
OMA 1 1.010 - - QHG62203
OrthoDB 1 1.010 - - D1197354at2759
OrthoFinder 1 1.000 - - FOG0001382
OrthoInspector 1 1.000 - - otm2824
orthoMCL 1 0.900 - - OOG6_100429
Panther 1 1.100 - - O PTHR13718
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X871
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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