DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS2 and rps2

DIOPT Version :9

Sequence 1:NP_001260303.1 Gene:RpS2 / 34309 FlyBaseID:FBgn0004867 Length:267 Species:Drosophila melanogaster
Sequence 2:NP_588435.1 Gene:rps2 / 2539067 PomBaseID:SPCC576.08c Length:253 Species:Schizosaccharomyces pombe


Alignment Length:256 Identity:176/256 - (68%)
Similarity:212/256 - (82%) Gaps:10/256 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADEAPARSGFRGGFGSRGGRGGRGRGRGRWARGRGKEDSKEWVPVTKLGRLVREGKIKSLEEIY 65
            ||:.||.      ||| |||||||||||||  ||..:::.|||||||||||||:.|||||:||||
pombe     1 MAESAPR------GFG-RGGRGGRGRGRGR--RGAKRDEEKEWVPVTKLGRLVKAGKIKSIEEIY 56

  Fly    66 LYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 130
            ||||||||::|:|:|| ..|.|||:|::||||||||||||||||||.|||::||:|||:||:|||
pombe    57 LYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEV 120

  Fly   131 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKK 195
            |||||||||:.|||::|:||||||..:|.|||||.||:||||||:|||:|||||.|:|:|||.|:
pombe   121 ATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKR 185

  Fly   196 LLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFL 256
            .|.:||||||||.:||||.|||||.||.:||.:.||..|||:||.|.|.|.||.:.|:|.|
pombe   186 FLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEYADIL 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS2NP_001260303.1 uS5_euk_arch 37..245 CDD:273398 148/207 (71%)
Ribosomal_S5 85..149 CDD:278748 49/63 (78%)
Ribosomal_S5_C 168..235 CDD:281681 44/66 (67%)
rps2NP_588435.1 uS5_euk_arch 28..236 CDD:273398 148/208 (71%)
Ribosomal_S5 75..139 CDD:278748 49/63 (78%)
Ribosomal_S5_C 158..221 CDD:281681 42/62 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 112 1.000 Domainoid score I1586
eggNOG 1 0.900 - - E1_COG0098
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37714
Inparanoid 1 1.050 363 1.000 Inparanoid score I452
OMA 1 1.010 - - QHG62203
OrthoFinder 1 1.000 - - FOG0001382
OrthoInspector 1 1.000 - - oto101404
orthoMCL 1 0.900 - - OOG6_100429
Panther 1 1.100 - - LDO PTHR13718
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1244
SonicParanoid 1 1.000 - - X871
TreeFam 1 0.960 - -
1413.860

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