DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mtDNA-helicase and AT1G30680

DIOPT Version :9

Sequence 1:NP_609318.1 Gene:mtDNA-helicase / 34307 FlyBaseID:FBgn0032154 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_849735.1 Gene:AT1G30680 / 839948 AraportID:AT1G30680 Length:709 Species:Arabidopsis thaliana


Alignment Length:631 Identity:125/631 - (19%)
Similarity:218/631 - (34%) Gaps:177/631 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 NAQKGTDHGLLAYVNKRTGAFICPNCDVKTSLTSALLSYQLPK-----------PVGYKQPLQRQ 133
            |...|...||           |||.|:...|...:|..:..|.           ..|.|..::..
plant   125 NCPPGQHSGL-----------ICPTCEGGNSGEKSLSLFIAPDGSSATWNCFRGKCGLKGGVRAD 178

  Fly   134 PVYESRFPHLAV---VTPE---------------ACAALGIKGLKEDQL--NAIGAQ-------W 171
            ....|..|...|   :|.|               |..|:..|.|:.:::  ..||.:       |
plant   179 GGLASADPIEKVERKITVEGIELEPLCDEIQDYFAARAISRKTLERNRVMQKRIGDEIVIAFTYW 243

  Fly   172 EPQQQLLHFKLRNAAQVEVGE----KVLYLGDRREEIFQSSSSSGLLIHGAMNKTKAVLVSNLID 232
            : :.:|:..|.|:..::...|    ::||..|..|:     :|..:::.|.::|           
plant   244 Q-RGELVSCKYRSLTKMFFQERKTRRILYGLDDIEK-----TSEVIIVEGEIDK----------- 291

  Fly   233 FIVLATQNIETHCVVCLP------YELKTLPQE-----------CLPALERFKELIFWLHYDASH 280
               ||.:.......|.:|      ...|.:|.|           |...|::...::  :..|...
plant   292 ---LAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDYLKKASRIV--IATDGDG 351

  Fly   281 SWDA-ARAFALKLDERRCLLIR-PTETE-------------PAPHLALRRRLNLRHILAKATPVQ 330
            ...| |...|.:|.:.||..:: |.::|             ..|||       |:..:..|.|..
plant   352 PGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPHL-------LKEAILDAEPYP 409

  Fly   331 HKAITTFGAMRNDILSELQ-NIEKVNG------VKWKRFPVLNKLLKGHRRGELTILTGPTGSGK 388
            ...:.:|    .|...|:. ..::.:|      ..||....|..::.    ||||::||...|||
plant   410 ILGLFSF----KDFFDEIDAYYDRTHGHEYGVSTGWKNLDNLYSVVP----GELTVVTGIPNSGK 466

  Fly   389 TTFMSEYSLDLAMQGVNTLWG------SFEIRNTRLAATLLRQYVGYPLDD-------------R 434
                ||: :|..:..:|...|      |.|.:....|..||.:::..|..|             .
plant   467 ----SEW-IDAMLCNLNHSVGWKFALCSMENKVRDHARKLLEKHIKKPFFDADYGRSVQRMSVEE 526

  Fly   435 LHEFNHW--------AAEFERLPLYFMTFHGQQPLKPVLEAIEHASYVHDVMHVIIDNLQFMMGV 491
            ..|...|        ..|.:.||          .:..|||..:.|...:.:..::||....:...
plant   527 KDEGKKWLNDTFYPIRCEMDSLP----------SIDWVLERAKAAVLRYGIRGLVIDPYNELDHQ 581

  Fly   492 STFRGDKFFEQDSIIAAFRSFATKHNVHVTLVMHPRKERQEDELTTS--SVFGTAKATQEADNVL 554
            .|.|..:......::...:.|:..|:.||..|.||::.:..|....:  .:.|:|....:.||.:
plant   582 RTPRQTETEYVSQMLTKIKRFSQHHSCHVWFVAHPKQLQHWDGGAPNLYDISGSAHFINKCDNGI 646

  Fly   555 IIQDKRLTSVRGKKYLQI----AKNRYSGDLGIMPLEFDKDGLSYS 596
            |:...|..:......:||    .:|:.:|.:|...|.:|:...|||
plant   647 IVHRNRDENAGPLDLVQIGVRKVRNKVAGQIGDAYLCYDRTTGSYS 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mtDNA-helicaseNP_609318.1 GP4d_helicase 342..598 CDD:238542 64/295 (22%)
AT1G30680NP_849735.1 Toprim_4 280..372 CDD:290388 19/107 (18%)
P-loop_NTPase 420..692 CDD:304359 61/290 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D212176at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_103182
Panther 1 1.100 - - LDO PTHR12873
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.