DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and htr3b

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:XP_021324909.1 Gene:htr3b / 571632 ZFINID:ZDB-GENE-071012-4 Length:369 Species:Danio rerio


Alignment Length:361 Identity:106/361 - (29%)
Similarity:176/361 - (48%) Gaps:39/361 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LSLFVLLIFLA-IIKESCQGPHEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDVDEK 72
            |||.:.:|.|| ::.|..:.....:|...||..||...|||.|.::|..:...|.:|.::|||.:
Zfish     7 LSLLLSVIPLAELVPEKPKRSALNQLTRLLLRKYNCGVRPVQNWTKPTTIYIDLIIQAVLDVDGQ 71

  Fly    73 NQILTTNAWLNLEWNDYNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTYHTNIVVK 137
            .|.:||:.|....|||..|.|:..|:.|:.::.::.:.:|.||:::....|.| .......:.|.
Zfish    72 TQKVTTSIWYRQIWNDEFLVWDPDEFDGITEISLSSDAIWVPDLIISEFVDVG-KSPVIPYVYVN 135

  Fly   138 HNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVL---NSEDGGDLSDFIT 199
            .:|......|....|.|.::|..||||.|:|.:.|.||.:..:::||.|   ..|...|..:|:.
Zfish   136 CSGKVKNYKPIQVVSACHLEIYAFPFDKQNCTLTFRSWLHSVSEVDLALWRPAEEIANDTREFMN 200

  Fly   200 NGEWYLLAMPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD 264
            :|||.||.:|.:..|:...  ...|..|.|.:.||||.|.|...|::|.:.:..:.::.|.|||:
Zfish   201 DGEWELLGVPSRYWTLNLE--DRDYAQIQFNVLIRRRPLLYVVGLLIPSIFLMVVDVISFYLPPN 263

  Fly   265 SGEKLTLGVTILLSLTVF-LNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPL 328
            ||.::|...:|||..||. :||:.| :|.|:...|||||                          
Zfish   264 SGTRITFKTSILLGYTVIRVNLMDE-IPATAIKTPLIGV-------------------------- 301

  Fly   329 LGTYFNCIMFMVASSVVLTVVVLN-YHHRTADIHEM 363
               :|...|.::..|:.:::.|:. .|:...::.||
Zfish   302 ---FFAICMALLLLSLAMSIFVVKLLHYSEKEVKEM 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 104/359 (29%)
LGIC_ECD_nAChR 55..236 CDD:349798 54/183 (30%)
htr3bXP_021324909.1 Neur_chan_LBD 26..>325 CDD:332142 96/331 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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