DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and NtR

DIOPT Version :10

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster


Alignment Length:391 Identity:81/391 - (20%)
Similarity:141/391 - (36%) Gaps:86/391 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 IIKESCQGPHEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNL 84
            |:||..:   .::||:||.........| ||.|   .:.|....:.:. .::.:.:|.|...:.:
  Fly   209 IVKEETK---TEKLLSHLNIQAENASMP-ANLS---SISFHFQTRSLA-YEQTSSLLQTRMHMMM 265

  Fly    85 EWNDYNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTYHT-NIVVKHNGS-CLYVPP 147
            .|.|..|.|...::|.::.......::|||.:.:.|.|.:.......: .::|..||| .||...
  Fly   266 HWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYANGSITLYAQN 330

  Fly   148 GIFKSTCKIDITWFPFDDQHCEMKFG-------------------------------SWTYDGNQ 181
            ....|.|......:|.:...|:::.|                               .|::  .|
  Fly   331 LQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNTPSGWSF--TQ 393

  Fly   182 LDLVLNSEDGGDLSDFITNGEWYLLAMPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIV 246
            :.:||...|    |....|.:..:..|.|.             |.|.||:|  |...:|.....:
  Fly   394 MSVVLVEND----SQRRYNPKGMMQKMTGD-------------VAIEFTLQ--RNRSFYMTVFYL 439

  Fly   247 PCVLISSMALLGFTLPPDSGEKLTLGVTILLSL--TVFLNLVAES--MPTTSDAVPLIGVT---- 303
            |.:......:|.|.|.......|.| :.:|::.  .:::...|..  :|....|..:|.:|    
  Fly   440 PLIACQMFLILSFVLRSTRRSSLIL-IALLIAAWGLMYMTRYASPHYVPPMMTAYKVIMMTTTYC 503

  Fly   304 -ILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHHRT--ADIHEMPP 365
             ||....::|:|    .|..|.|...|....|       |:|:..::.|.:...|  .||.| .|
  Fly   504 YILHICIIWLDL----YPPRSKAPGWLVRVIN-------SNVLRCILGLRFSDSTDYCDIQE-NP 556

  Fly   366 W 366
            |
  Fly   557 W 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:455710 81/391 (21%)
LGIC_ECD_nAChR 55..236 CDD:349798 38/213 (18%)
Cys-loop 154..168 CDD:349798 2/13 (15%)
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 47/245 (19%)
Blue background indicates that the domain is not in the aligned region.

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