Protein Alignment nAChRalpha6 and NtR

DIOPT Version :9

• Sequence 1: NP_995675.1
• Gene: nAChRalpha6 / 34304
• FlyBaseID: FBgn0032151
• Length: 523
• Species: Drosophila melanogaster
• Sequence 2: NP_651958.2
• Gene: NtR / 43935
• FlyBaseID: FBgn0029147
• Length: 585
• Species: Drosophila melanogaster
• Alignment Length: 391
• Identity: 81/391 - (20%)
• Similarity: 141/391 - (36%)
• Gaps: 86/391 - (21%)

  Fly    20 IIKESCQGPHEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNL 84
            |:||..:   .::||:||.........| ||.|   .:.|....:.:. .::.:.:|.|...:.:
  Fly   209 IVKEETK---TEKLLSHLNIQAENASMP-ANLS---SISFHFQTRSLA-YEQTSSLLQTRMHMMM 265

  Fly    85 EWNDYNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTYHT-NIVVKHNGS-CLYVPP 147
            .|.|..|.|...::|.::.......::|||.:.:.|.|.:.......: .::|..||| .||...
  Fly   266 HWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYANGSITLYAQN 330

  Fly   148 GIFKSTCKIDITWFPFDDQHCEMKFG-------------------------------SWTYDGNQ 181
            ....|.|......:|.:...|:::.|                               .|::  .|
  Fly   331 LQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNTPSGWSF--TQ 393

  Fly   182 LDLVLNSEDGGDLSDFITNGEWYLLAMPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIV 246
            :.:||...|    |....|.:..:..|.|.             |.|.||:|  |...:|.....:
  Fly   394 MSVVLVEND----SQRRYNPKGMMQKMTGD-------------VAIEFTLQ--RNRSFYMTVFYL 439

  Fly   247 PCVLISSMALLGFTLPPDSGEKLTLGVTILLSL--TVFLNLVAES--MPTTSDAVPLIGVT---- 303
            |.:......:|.|.|.......|.| :.:|::.  .:::...|..  :|....|..:|.:|
  Fly   440 PLIACQMFLILSFVLRSTRRSSLIL-IALLIAAWGLMYMTRYASPHYVPPMMTAYKVIMMTTTYC 503

  Fly   304 -ILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHHRT--ADIHEMPP 365
             ||....::|:|    .|..|.|...|....|       |:|:..::.|.:...|  .||.| .|
  Fly   504 YILHICIIWLDL----YPPRSKAPGWLVRVIN-------SNVLRCILGLRFSDSTDYCDIQE-NP 556

  Fly   366 W 366
            |
  Fly   557 W 557

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nAChRalpha6	NP_995675.1	LIC	11..517	CDD:273305	81/391 (21%)
		LGIC_ECD_nAChR	55..236	CDD:349798	38/213 (18%)
NtR	NP_651958.2	Methyltransf_FA	90..191	CDD:289052
		Neur_chan_LBD	212..429	CDD:280998	47/245 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR18945
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	1.100