DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and Grd

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster


Alignment Length:636 Identity:125/636 - (19%)
Similarity:219/636 - (34%) Gaps:187/636 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDSPLPASLSLFVLLIFLAIIKESCQGPHEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQ 65
            :.|.||:|.           :.:|....:...||::||..|:...||... ..|..::..:.::.
  Fly    91 LSSSLPSSW-----------LTQSNNHANISELLDNLLRGYDNSIRPDFG-GPPATIEVDIMVRS 143

  Fly    66 IIDVDEKNQILTTNAWLNLEWNDYNLRWNETEYGGVKD-LRITPN---KLWKPDVLMYNSADEGF 126
            :..:.|.:...:.:.:....|.|..|     .:.|.:| |.::.:   ::||||...||    |.
  Fly   144 MGPISEVDMTYSMDCYFRQSWVDKRL-----AFEGAQDTLALSVSMLARIWKPDTYFYN----GK 199

  Fly   127 DGTYHT----NIVVK--HNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQL--- 182
            ....||    |..|:  .||..||......|:.|.:::..||.|.|.|.:||||:.|..:.:   
  Fly   200 QSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYR 264

  Fly   183 ------------DLVLNSED-----GGDLSDFI---------------------TNGEWYLLAMP 209
                        |:.|:..|     .|:|:|.:                     |:......|.|
  Fly   265 WNKERPPVAIAEDMKLSQFDLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGP 329

  Fly   210 GKKNTIVYAC----------------------------------CPEPYVDITFTIQIRRRTLYY 240
            ..||..|...                                  .|..|..:.....::|....:
  Fly   330 AAKNQHVRGTGLKLDKGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNF 394

  Fly   241 FFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGVTIL 305
            ...:..||.|:..::.:.|                      :||..|     |:|.|.| |:|.:
  Fly   395 LIQVYGPCCLLVVLSWVSF----------------------WLNREA-----TADRVSL-GITTV 431

  Fly   306 LSLTVFLNLVAET-LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHHR------------- 356
            |::| ||.|.|.| ||:||  .|....:|..:.|....:.:|...|::|:.:             
  Fly   432 LTMT-FLGLEARTDLPKVS--YPTALDFFVFLSFGFIFATILQFAVVHYYTKYGSGECYFIIEEL 493

  Fly   357 ------------TAD--------IHEMPPWIKSVFLQWLPWILRMG----RPGRKITRKTILLSN 397
                        |:|        |:|:.| :....:...|...|:|    |..|...|:..|.|.
  Fly   494 DSESGESETEPLTSDFRGSTESKIYEVIP-LSMCAISMPPPPTRLGMLTSRNRRPRNRRHGLWSM 557

  Fly   398 RMKELELKERSSKSLLANVLDIDDDFRHTISGSQTAIGSSASFGRPTTVEEHHTA--IGCNHKDL 460
            ::..|....|..|...|:..:.:||.:..:..::....|:|:.......:....:  .|...:..
  Fly   558 KLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAAQAAAQAARISPPTGGRRRMS 622

  Fly   461 HLILKELQFITARMRKADDEAELIGDWKFAAMVVDRFCLIVFTLFTIIATV 511
            :...:|::  ..|..|...:...:..       :||...|||.|..|:..|
  Fly   623 YYRREEME--ARRKGKRTPQYNSVSK-------IDRASRIVFPLLFILINV 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 121/626 (19%)
LGIC_ECD_nAChR 55..236 CDD:349798 48/265 (18%)
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 49/225 (22%)
LIC 111..670 CDD:273305 120/605 (20%)
Neur_chan_memb 398..667 CDD:280999 63/308 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447314
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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