DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and Rdl

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster


Alignment Length:402 Identity:88/402 - (21%)
Similarity:151/402 - (37%) Gaps:112/402 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SPLPASLSLFV-LLIFLAIIKESCQGPHEK--------------------RLLNHLLSTYNTLER 46
            :|||.:..|.: |.|.:|:|.:  :..|::                    .:|:....:|:...|
  Fly    13 APLPRTPLLTIWLAINMALIAQ--ETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVR 75

  Fly    47 PVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLRWNETEYGGVKDLRITP--- 108
            |... ..|:||...:.:..|..:.|.....|.:.:....|.|..|.:.:..  ||:.|.:..   
  Fly    76 PNYG-GPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRP--GVETLSVGSEFI 137

  Fly   109 NKLWKPDVLMYNSADEGFDGTYHTN--IVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMK 171
            ..:|.||....|.....|.....:|  |.|.|:||..........::|.:::.:||.|.|.|.::
  Fly   138 KNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIE 202

  Fly   172 FGSWTY----------DGNQLDLV-LNSEDGGDLSDF-------------ITNGEWYLLAMPGKK 212
            ..|:.|          ||  |..| ::||  .:|..|             :|.|.:..||     
  Fly   203 IESFGYTMRDIRYFWRDG--LSSVGMSSE--VELPQFRVLGHRQRATEINLTTGNYSRLA----- 258

  Fly   213 NTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLGVTIL 276
                   |         .||..|...||...:.:|..||..::.:.|.|..: :..::.||||.:
  Fly   259 -------C---------EIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTV 307

  Fly   277 LSLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVA 341
            |::|..       |.:|:.|:|.|  :.:.|:.|:                 |||   |.:.:.|
  Fly   308 LTMTTL-------MSSTNAALPKI--SYVKSIDVY-----------------LGT---CFVMVFA 343

  Fly   342 SSVVLTVVVLNY 353
            |  :|....:.|
  Fly   344 S--LLEYATVGY 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 85/394 (22%)
LGIC_ECD_nAChR 55..236 CDD:349798 45/209 (22%)
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 45/209 (22%)
Neur_chan_memb 274..588 CDD:397193 26/111 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447323
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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