Sequence 1: | NP_995675.1 | Gene: | nAChRalpha6 / 34304 | FlyBaseID: | FBgn0032151 | Length: | 523 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001379138.1 | Gene: | deg-3 / 3565200 | WormBaseID: | WBGene00000951 | Length: | 564 | Species: | Caenorhabditis elegans |
Alignment Length: | 537 | Identity: | 154/537 - (28%) |
---|---|---|---|
Similarity: | 249/537 - (46%) | Gaps: | 97/537 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 32 RLLNHLLS--TYNTLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLRWN 94
Fly 95 ETEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGT-YHTNIVVKHN------GSCL-YVPPGIFK 151
Fly 152 STCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLNSEDGGDLSDFITNGEWYLLAMPGKKNTIV 216
Fly 217 YACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLP----PDSGEKLTLGVTILL 277
Fly 278 SLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVAS 342
Fly 343 SVVLTVVVLNYHHRTADIHEMPPWIKSVFLQWLPWILRMGRP----------------------- 384
Fly 385 ---GRKITRKTILLSNRMKELELKER----SSKSLLANVLDIDDDFRHTISGSQTAIGSSASFGR 442
Fly 443 PTTV-----EEHHTAIGCNHKDL----HLILKELQFITARMRKADDEAELIGDWKFAAMVVDRFC 498
Fly 499 LIVFTLFTIIATVTVLL 515 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha6 | NP_995675.1 | LIC | 11..517 | CDD:273305 | 154/537 (29%) |
LGIC_ECD_nAChR | 55..236 | CDD:349798 | 64/188 (34%) | ||
deg-3 | NP_001379138.1 | Neur_chan_LBD | 53..266 | CDD:397192 | 74/214 (35%) |
LGIC_TM_cation | 267..>357 | CDD:349853 | 39/118 (33%) | ||
TM1 helix | 271..291 | CDD:349853 | 8/19 (42%) | ||
Neur_chan_memb | 273..543 | CDD:397193 | 75/311 (24%) | ||
TM2 helix | 303..324 | CDD:349853 | 6/20 (30%) | ||
TM3 helix | 335..357 | CDD:349853 | 9/49 (18%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |