DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and lgc-8

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_001023533.2 Gene:lgc-8 / 3564870 WormBaseID:WBGene00013338 Length:438 Species:Caenorhabditis elegans


Alignment Length:520 Identity:127/520 - (24%)
Similarity:211/520 - (40%) Gaps:148/520 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 KRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLRWNE 95
            ::|.:.|:..|::..|||.||.:.|.:...:.....:.:|...:.:..:....|:|.|..|.||:
 Worm    29 EQLKDVLMEGYDSSIRPVINERDTLFINISINSMSFLTLDPAEETINFSGEFILQWKDEFLFWNK 93

  Fly    96 TEYGGVKDLRITPNKLWKPDVLMYNSADEG-------------FDGTYHTNIVVKHNGSCLYVPP 147
            ::| .:..|::..:.||.||..:..|.|..             :|||...||.            
 Worm    94 SDY-NITWLKLKESFLWTPDTTVSTSIDTNYLIETSERYVSVKYDGTVRQNIY------------ 145

  Fly   148 GIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLNSEDGGDL------SDFITNGEW--- 203
            .:|.:.|.::|..||:|.|.|.:|.|.|:|...::..::    |||:      ..|..|.||   
 Worm   146 AVFTNLCDMNINEFPYDQQTCMIKMGPWSYTMKEVTCIV----GGDIERNETTGKFQGNSEWDFE 206

  Fly   204 YLLAMPGKKNTIVYACCPEPYVDITFT-----IQIRRRTLYYFFNLIVPCVLISSMALLG-FTLP 262
            .:::..|:..        :|.|:.||:     :.::||..:|.:.|::|..:|:.:.:.| ||..
 Worm   207 GIVSSVGETE--------DPDVNFTFSEVHFALTVKRRPQFYVWVLLIPTYIITVVCIFGLFTPT 263

  Fly   263 PDSG---EKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSD 324
            .:.|   |::.||:|.|||..|.|.:||.:||.||:                             
 Worm   264 ANHGLREERVNLGITTLLSSAVILQIVANAMPKTSE----------------------------- 299

  Fly   325 AIPLLGTYFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPPWIKSVFLQWLPWILRMGRPGRKIT 389
             :||||.:....:|:||..|:..|:||..|.|.......||       .|:.|||||        
 Worm   300 -LPLLGNFILAEIFVVAIGVLFAVLVLTLHQRAHTREWRPP-------AWMLWILRM-------- 348

  Fly   390 RKTILLSNRMKELELKERSSKSLLANVLDIDDDFRHTISGSQTAIGSSASFGRPTTVEE-HHTAI 453
                            ..|||.|..|:..|    ||                :.:|.|. |:|..
 Worm   349 ----------------TGSSKFLSRNITKI----RH----------------KSSTAERIHYTGE 377

  Fly   454 GCN-HKDLHLILKELQFITARMRKAD-DEAELIGDWKFAAMVVDRFCLIVFTLFTI-IATVTVLL 515
            |.. .|:|.   :.||.:...:::.| |....:...||    .||...::..:|.: .|.||:.|
 Worm   378 GAYLFKNLD---ESLQSVREYIQEEDRDYFRELTYVKF----FDRLDFLLLLIFQVGNALVTLFL 435

  Fly   516  515
             Worm   436  435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 127/520 (24%)
LGIC_ECD_nAChR 55..236 CDD:349798 45/207 (22%)
lgc-8NP_001023533.2 Neur_chan_LBD 29..237 CDD:280998 54/232 (23%)
Neur_chan_memb 244..>348 CDD:280999 41/140 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I7808
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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