DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and nAChRbeta3

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster


Alignment Length:524 Identity:113/524 - (21%)
Similarity:211/524 - (40%) Gaps:122/524 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PLPASLSLFVLLIFLAIIKESCQGPHEK--------RLLNHLLSTYNTLERPVANESEPLEVKFG 60
            ||...:.:.:||:.|..:..:......|        ||...|.:.|::..:||. :..|..|...
  Fly    17 PLLLQMLMGMLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVF-QGTPTNVSLE 80

  Fly    61 LTLQQIIDVDEKNQILTTNAWLNLEWNDYNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEG 125
            :.: ..||:||.|..|||:.||||.|.|....|..::|..:..:.:..:::|.|.:.::|..:.|
  Fly    81 MVV-TYIDIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGG 144

  Fly   126 FDGTYHTNIVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLNSED 190
            .  ...|.:.:.|:|...::||.::.:.|::::..:|.|.|.|::|.|||   |.::.|..|...
  Fly   145 L--MAETQVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSW---GLKVVLPENGTA 204

  Fly   191 GG---DLSDFITNGEWYLLAMPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLIS 252
            .|   |..|.:.:.||.::      ::..:....:.|..:.:|:..:||:..|...:..|...|.
  Fly   205 RGESLDHDDLVQSPEWEIV------DSRAHFVSQDYYGYMEYTLTAQRRSSMYTAVIYTPASCIV 263

  Fly   253 SMALLGFTLPPD-SGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVA 316
            .:||..|.|||. .|||:                             :|...:::.:..||...|
  Fly   264 ILALSAFWLPPHMGGEKI-----------------------------MINGLLIIVIAAFLMYFA 299

  Fly   317 ETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVL----NYHHRTADIHEMPPWIKSVFLQWL-P 376
            :.||.:|:..||:..:::..:..::.|.::.|:||    ..|.|     .:|..::.:....| .
  Fly   300 QLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVLYLATGKHKR-----RLPEALRKLLHGHLGT 359

  Fly   377 WILRMGRPGRKITRKTILLSNRMKELELKERSSKSLLANVLDIDDDFRHTISGSQTAIGSSASFG 441
            |:|                      |.:...:.:|......::|:   |....:.          
  Fly   360 WLL----------------------LSVFSTTGESQAEKTKEMDE---HPYEEAD---------- 389

  Fly   442 RPTTVEEHHTAIGCNHKDLHLILKELQFITARMRKADDEAELIGDWKFAAMVVDRFCLIVFTL-F 505
                 |:..:.:|.||.::. ..|..||                ||...|..|||...:.|:| |
  Fly   390 -----EQESSPLGINHTEVP-GAKANQF----------------DWALLATAVDRISFVSFSLAF 432

  Fly   506 TIIA 509
            .|:|
  Fly   433 LILA 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 111/517 (21%)
LGIC_ECD_nAChR 55..236 CDD:349798 45/183 (25%)
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 108/502 (22%)
Neur_chan_LBD 52..247 CDD:280998 52/207 (25%)
Neur_chan_memb 255..434 CDD:280999 50/269 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447302
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000891
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

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