Protein Alignment nAChRalpha6 and CG8916

DIOPT Version :9

• Sequence 1: NP_995675.1
• Gene: nAChRalpha6 / 34304
• FlyBaseID: FBgn0032151
• Length: 523
• Species: Drosophila melanogaster
• Sequence 2: NP_573090.3
• Gene: CG8916 / 32553
• FlyBaseID: FBgn0030707
• Length: 612
• Species: Drosophila melanogaster
• Alignment Length: 333
• Identity: 76/333 - (22%)
• Similarity: 137/333 - (41%)
• Gaps: 54/333 - (16%)

  Fly    33 LLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLRWNETE 97
            :|.:||..|...:.|...:..|..|:..:.::.:..|.|.:...:.:.:....|.|..|.:.
  Fly   111 ILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSFK--- 172

  Fly    98 YGGVKDLRIT---PNKLWKPDVLMYNSADEGFDGTYHTNIV------VKHNGSCLYVPPGIFKST 153
             |.:|.|.::   .:|:|:||...||    |.....|...|      :..||..||......|:|
  Fly   173 -GPIKSLSLSIKMLDKIWRPDTYFYN----GKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKAT 232

  Fly   154 CKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLNSEDGGDLSDFI---TNGEWYLLAMPGKKNTI 215
            |.:::..||.|.|.|.:..||:.|...||.....::|  |...|:   |..::.|::|..:..|.
  Fly   233 CPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQD--DAVSFVPGMTLNQFDLISMMHRNFTT 295

  Fly   216 VYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLT 280
            |........:.:.|  .::|.|.|:...:.|||:||..::.:.|.:..::
  Fly   296 VRREGDFSVLHVAF--NLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREA--------------- 343

  Fly   281 VFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVV 345
                        |||.|.|...::|...|:.|:...: ||:|..|..|  .:|..:.|:...:.:
  Fly   344 ------------TSDRVSLCVTSVLTLSTISLDSRTD-LPKVKYATAL--DWFLLMSFLYCIATL 393

  Fly   346 LTVVVLNY 353
            |....::|
  Fly   394 LEFAGVHY 401

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nAChRalpha6	NP_995675.1	LIC	11..517	CDD:273305	76/333 (23%)
		LGIC_ECD_nAChR	55..236	CDD:349798	44/192 (23%)
CG8916	NP_573090.3	LIC	92..598	CDD:273305	76/333 (23%)
		Neur_chan_LBD	111..315	CDD:280998	51/215 (24%)
		Neur_chan_memb	322..>403	CDD:280999	23/110 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR18945
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	1.100