DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and CG6927

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster


Alignment Length:602 Identity:130/602 - (21%)
Similarity:213/602 - (35%) Gaps:183/602 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDSPLPASLSLFVLLIFLAIIKESC------QGPHEKRLLNHLL--STYNTLERPV----ANESE 53
            |:..|..|:.|..|....:.:.|.|      ....:.:||:.|.  ..|:.||||:    ..:..
  Fly     1 MEWSLIISILLNCLYASASALDEDCPTLDDGDSLSQTQLLDRLTHGCRYDRLERPITYSETGQRL 65

  Fly    54 PLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLRWNETE------YGGVKDLRITPNKLW 112
            |::|.....:..:.:::..:......|.|.:.:.|..|.:....      ..|.:.||   |.||
  Fly    66 PVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPILGEEHLR---NSLW 127

  Fly   113 KPDVLMYNSADEGFDGTYHTNIVVKHNGSCLYVPPGIFKST--CKIDITWFPFDDQHCEMKFGSW 175
            .|.:.:.|..|....|....:|:...:.....:.....|:|  |.:::..||||:|||.....||
  Fly   128 MPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESW 192

  Fly   176 TYDGNQLDLVLNSE-------DGG-DLSDFITNGEWYLLAMPGKKNTIVYACCPE--------PY 224
            .|  |..:|||:.|       ||. .|::|:....|       ...|::.|...:        .|
  Fly   193 MY--NTSELVLHWEQKRPITYDGALHLTEFVLQRSW-------SNETVINADLSDLRHGAFAGNY 248

  Fly   225 VDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG-EKLTLGVTILLSLTVFLNLVAE 288
            ..::||:.:.|...:|..:..:|.:||.:::.:.|.|..|.. .::|||.:.||:   |:.|.:.
  Fly   249 SSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLT---FITLASA 310

  Fly   289 SMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYF-NCIMFMVASSVVLTVVVLN 352
            .                          .:|||:|| .|.:...:| .|.:|:..|.|....|...
  Fly   311 Q--------------------------GKTLPKVS-YIKVSEVWFLGCTIFIFGSMVEFAFVNTI 348

  Fly   353 YHHRTADIHEMPPWIKSVFLQWLPWILRMGRPGRKITRKTILLSNRMKELELKERS---SKS--- 411
            :..:           |||             |.:|:..|.||.|.....| |:.||   |:|   
  Fly   349 WRRK-----------KSV-------------PVKKLNSKHILKSTLSPNL-LRRRSHARSRSFSG 388

  Fly   412 --------------------LLAN----------VLD----------IDDDFRHTISGSQTAIGS 436
                                |..|          |||          :|.:|..:..||   :||
  Fly   389 TALHKTADTGSLGGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGS---MGS 450

  Fly   437 SASFGRPTTVEEHHTAIGCNHKDLHLILKELQFITARMRKADDEAEL-IGDW-----KFAAMVVD 495
            :.|.|..:......|....|                |...|..:.|: :..|     :..||.:|
  Fly   451 AQSTGAISAASSSQTLTNNN----------------RTESAGHQEEIDLSGWTTLTPQEIAMWID 499

  Fly   496 ---RF----CLIVFTLF 505
               ||    ..:||.||
  Fly   500 SRARFVFPLSFLVFNLF 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 127/592 (21%)
LGIC_ECD_nAChR 55..236 CDD:349798 44/204 (22%)
CG6927NP_572194.1 LIC 3..520 CDD:273305 129/600 (22%)
Neur_chan_LBD 36..259 CDD:280998 53/234 (23%)
Neur_chan_memb 270..518 CDD:280999 68/321 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447260
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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