DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and acr-11

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_491906.1 Gene:acr-11 / 191599 WormBaseID:WBGene00000050 Length:461 Species:Caenorhabditis elegans


Alignment Length:515 Identity:222/515 - (43%)
Similarity:313/515 - (60%) Gaps:71/515 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LIFLAIIKES-CQGP-HEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDVDEKNQILT 77
            ::.|.||..: |.|. .|.:|...||..||.|||||.|.|:|||||..|.||||:||||||||::
 Worm     9 ILSLVIIHSNLCDGSVAETKLFTDLLKGYNPLERPVQNSSQPLEVKIKLFLQQILDVDEKNQIVS 73

  Fly    78 TNAWLNLEWNDYNLRWNETEYGGVKDLRI--TPNKLWKPDVLMYNSADEGFDGTYHTNIVVKHNG 140
            .||||:..|.|:.|:|...:|||::|:|.  :.:.:||||||:||||.|.||.|:.:|::..|.|
 Worm    74 VNAWLSYTWFDHKLQWEPKKYGGIQDIRFPGSSDHIWKPDVLLYNSAAEDFDSTFKSNLLTYHTG 138

  Fly   141 SCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLNSEDGG----DLSDFITNG 201
            :.:::|||:.|..|::|:||||||||.|||||||||:.|..:||.::.:..|    |||.::.||
 Worm   139 TVVWIPPGVLKFVCQLDVTWFPFDDQVCEMKFGSWTFHGYAIDLQIDDDTNGTQSMDLSTYLVNG 203

  Fly   202 EWYLLAMPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 266
            ||.:::...|:....|.||||||..:.:.:.||||||||.||||:|.:|||.||:|||..|||:|
 Worm   204 EWQVISTNAKRVVSYYKCCPEPYPTVNYYLHIRRRTLYYGFNLIIPSLLISLMAILGFMFPPDAG 268

  Fly   267 EKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLLGT 331
            ||:||.|||||::..||::|:|..|.||:|||||||                             
 Worm   269 EKITLEVTILLAIVFFLSMVSEMTPPTSEAVPLIGV----------------------------- 304

  Fly   332 YFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPPWIKSVFLQWLPWILRMGRPGRKITRKTILLS 396
            :|:|.|.:|::|||.|:||||.|.|:||.|||.|.::.|.|::|||:|.|.|||.|..:..::.|
 Worm   305 FFSCCMLVVSASVVFTIVVLNLHFRSADSHEMNPLVRRVLLEFLPWLLFMSRPGYKFVKANVIDS 369

  Fly   397 NRMKELELKERSSKSLLANVLDIDDDFRHTISGSQTAIGSSASFGRPTTVEEHHTAIGCNHKDLH 461
            ......:.|         |.||.:....|....:|..:                         ||
 Worm   370 TDKMPKKPK---------NPLDCNLPSNHAGYEAQILL-------------------------LH 400

  Fly   462 LILKELQFITARMRKADDEAELIGDWKFAAMVVDRFCLIVFTLFTIIATVTVLLSAPHII 521
            .:..||:.:.|...|.:.:..:..||:||||||||.||::||:|.:|:.:.:::||||||
 Worm   401 SVHTELRRVVAFYNKEEHDERIQTDWRFAAMVVDRACLLLFTVFIVISILAIMMSAPHII 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 216/509 (42%)
LGIC_ECD_nAChR 55..236 CDD:349798 91/186 (49%)
acr-11NP_491906.1 LIC 25..456 CDD:273305 211/493 (43%)
Neur_chan_LBD 26..239 CDD:280998 106/212 (50%)
Neur_chan_memb 246..447 CDD:280999 97/263 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3646
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3299
OMA 1 1.010 - - QHG45242
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 1 1.000 - - FOG0000891
OrthoInspector 1 1.000 - - mtm4815
orthoMCL 1 0.900 - - OOG6_104534
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3025
SonicParanoid 1 1.000 - - X767
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.770

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