DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and lgc-14

DIOPT Version :10

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_510024.2 Gene:lgc-14 / 187972 WormBaseID:WBGene00011355 Length:400 Species:Caenorhabditis elegans


Alignment Length:321 Identity:74/321 - (23%)
Similarity:146/321 - (45%) Gaps:59/321 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EKRLLNHLLSTYNTLERPVANESEPLE-----------VKFGLTLQ--QIIDVDEKNQILTTNAW 81
            :..|...|.:.|:....||.::.:||:           ..:.:.|.  ::::|:|..:.:.....
 Worm    34 QTNLTRDLFNGYDPTVSPVYSKIDPLQPLGYDPDAPKRYNYSIMLYSLKLVEVNEPAEKVAVVME 98

  Fly    82 LNLEWNDYNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEGFD--------------GTYHT 132
            :...|.|..|.||.:.|..:.......:.:|.|.:..: .|||..|              |..:.
 Worm    99 IMEYWYDIRLSWNASLYDDIDTFYTRQSNVWSPTLSAF-GADELVDLRDPDFRMVCVNSNGYIYD 162

  Fly   133 NIVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDL-------VLNSED 190
            .|.|:.:.||   |..::|         ||||.|.|::||....::..::.:       ||.|  
 Worm   163 YISVRVSSSC---PMNVYK---------FPFDYQTCQIKFCLPIFNSVEIQIFNEIYVGVLMS-- 213

  Fly   191 GGDLSDFITNGEWYLLAMPGKKNTIVYACCPEPYVDI---TFTIQIRRRTLYYFFNLIVPCVLIS 252
              ||.:.:.|.||.|..:..:..|:.|   .:.:.::   .|.|.|:|..|||.:.:|.|..:|:
 Worm   214 --DLWETMGNSEWKLTNLSNRVETLQY---NDGFGNLDLGIFEITIKRNPLYYIYMIIFPSFIIN 273

  Fly   253 SMALLG-FTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFL 312
            .::::| |....|...:|.:|:|.::::|..|.::|:.:|.|. .:|::||.|:::|.:.:
 Worm   274 VVSIIGVFLKGADKMSRLNVGLTNIMTMTFILGVMADKIPRTG-TIPMLGVYIIVNLAIMI 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:455710 74/321 (23%)
LGIC_ECD_nAChR 55..236 CDD:349798 45/217 (21%)
Cys-loop 154..168 CDD:349798 5/13 (38%)
lgc-14NP_510024.2 LGIC_ECD_cation 75..257 CDD:349790 44/201 (22%)
Cys-loop 172..186 CDD:349790 8/25 (32%)
LGIC_TM 259..349 CDD:476813 22/76 (29%)
TM1 helix 263..284 CDD:349850 5/20 (25%)
TM2 helix 292..313 CDD:349850 5/20 (25%)
TM3 helix 323..345 CDD:349850 3/11 (27%)

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