Sequence 1: | NP_995675.1 | Gene: | nAChRalpha6 / 34304 | FlyBaseID: | FBgn0032151 | Length: | 523 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001355512.1 | Gene: | acr-21 / 185004 | WormBaseID: | WBGene00000060 | Length: | 635 | Species: | Caenorhabditis elegans |
Alignment Length: | 626 | Identity: | 195/626 - (31%) |
---|---|---|---|
Similarity: | 289/626 - (46%) | Gaps: | 175/626 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 32 RLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLRWNET 96
Fly 97 EYGGVKDLRITPNKLWKPDVLMYNSADEGF-DGTYHTNIVVKHNGSCLYVPPGIFKSTCKIDITW 160
Fly 161 FPFDDQHCEMKFGSWTYDGNQLDLVLNSEDGGDLSDFITNGEWYLLAMPGKKNTIVYACCPEPYV 225
Fly 226 DITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESM 290
Fly 291 PTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHH 355
Fly 356 RTADIHEMPPWIKSVFLQWLPWILRMG-RPGRKI-------------TRKTILLSNRMKELE--- 403
Fly 404 ------------LKERSSKSLL-ANVLDIDDDFRHTISGSQTA------------IGSSASF--G 441
Fly 442 RPTTVEEHHTAIG------------CNH------------------------------------- 457
Fly 458 ---------------------------------------------KDLHLILKELQFITAR--MR 475
Fly 476 KAD-DEAELIG-DWKFAAMVVDRFCLIVFTLFTIIATVTVL 514 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha6 | NP_995675.1 | LIC | 11..517 | CDD:273305 | 195/626 (31%) |
LGIC_ECD_nAChR | 55..236 | CDD:349798 | 80/181 (44%) | ||
acr-21 | NP_001355512.1 | LGIC_ECD_nAChR | 56..237 | CDD:349798 | 80/181 (44%) |
Cys-loop | 156..170 | CDD:349798 | 6/13 (46%) | ||
LGIC_TM_cation | 239..>327 | CDD:349853 | 50/116 (43%) | ||
TM1 helix | 239..263 | CDD:349853 | 15/23 (65%) | ||
TM2 helix | 271..292 | CDD:349853 | 14/20 (70%) | ||
TM3 helix | 303..325 | CDD:349853 | 6/50 (12%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D363540at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |