DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and lgc-25

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_510359.3 Gene:lgc-25 / 181525 WormBaseID:WBGene00010994 Length:502 Species:Caenorhabditis elegans


Alignment Length:580 Identity:128/580 - (22%)
Similarity:213/580 - (36%) Gaps:155/580 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LSLFVLLIFLAIIKESCQGPHEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDVDEKN 73
            |.|..:|:...:..:.|....|::|...|:..||...|||.:|:...:|...|::..:..|||..
 Worm     6 LLLIGILVIWHLDNQVCGLSKEQQLEKQLMVKYNYKVRPVKSEATVTQVNVFLSIAHVEKVDEHE 70

  Fly    74 QILTTNAWLNLEWNDYNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTYHTNIVVKH 138
            |....:..:...|.|..::| :.:...|..|.|:.:.||:|.:.:||||              :.
 Worm    71 QTALVHGHIWATWIDEYMQW-DAKKENVTKLTISAHSLWQPALALYNSA--------------RG 120

  Fly   139 NGSCLY---VPPGIFKS-------------TCKIDITWFPFDDQHCEMKFGSWTYDGNQLDL--- 184
            |...||   :|..::.:             ||:.|.|.:|||.|.|.:....|.|:.||::|   
 Worm   121 NSWHLYMGAMPATVYSTGKVWSTGTFSFYVTCQFDFTNWPFDQQSCPIVIADWVYNLNQVNLSDP 185

  Fly   185 ----------VLNSEDGGDLSDFITNGEWYLLAMPGKKNTIVYAC------CPEPYVD------- 226
                      :..|.|..:.||......|.::. ..||:     |      |.|...:       
 Worm   186 YILKEYGKPSIRLSYDPIEKSDKRHVAGWEVMD-AWKKH-----CYWGPKGCKEEQPEGEAEWYW 244

  Fly   227 --ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAES 289
              :.|.|.:||...|:..:::.|....|.:.||.|.:...|          :...|:.||::.:|
 Worm   245 SLLEFGIILRRHLPYFSLSILFPMAGTSLILLLCFWIETHS----------ICFFTIMLNIILQS 299

  Fly   290 MPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYH 354
            ...:|                   |:|: :|..|...|.:...:|  |.::.|:|...::|.   
 Worm   300 YYGSS-------------------LLAK-MPPGSGRTPKIVHLYN--MNLLLSAVQFVLIVF--- 339

  Fly   355 HRTADIHEMPPWIKSVFLQWLPWILRM-------------GRPGR-----KITRKTI------LL 395
                          |.||:     ||:             |.|.|     ..|:|.:      |.
 Worm   340 --------------SEFLR-----LRLPKKFELDLGFDIIGVPQRFGVDKLFTQKGLSFDPQELF 385

  Fly   396 SN----RMKELELKERSSKSLLANVLDIDDDFRHTISGSQTAIGSSASFGRPTTVEEHHTAIGCN 456
            ||    |..| |:.|:...|...:| .|.:.....|:..|.:..||.....|.|.|....:...:
 Worm   386 SNVYSTRTLE-EILEQGGGSSSTSV-GIGNPLHEDITSFQKSSDSSVLIDIPMTSEPQSFSASTS 448

  Fly   457 HKDLHLILKELQFITARMRKADDEAELIGDWKFAAMVVDRFCLIVFTLFTIIATVTVLLS 516
                .|:..|...........:.|.|.|.|.:...:....|||::|  ..|||.:.||.:
 Worm   449 ----ELLSSEPSSNEETQISEEPEEERILDVQLRHIKRYVFCLVIF--IHIIAFLLVLFT 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 127/578 (22%)
LGIC_ECD_nAChR 55..236 CDD:349798 50/224 (22%)
lgc-25NP_510359.3 LGIC_ECD_cation 52..256 CDD:349790 50/224 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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