DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and nAChRalpha1

DIOPT Version :10

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:XP_061502948.1 Gene:nAChRalpha1 / 1272986 VectorBaseID:AGAMI1_015142 Length:581 Species:Anopheles gambiae


Alignment Length:387 Identity:171/387 - (44%)
Similarity:235/387 - (60%) Gaps:38/387 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 SLFVLLIFLAI-IKESCQGPHEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDVDEKN 73
            |:.:..:|:|: .......|..|||.:.|||.||.|.|||.|.|:.|.||.||.|.|:|||:.||
Mosquito     3 SVLLTAVFIALQFATGLANPDSKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 67

  Fly    74 QILTTNAWLNLEWNDYNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTYHTNIVVKH 138
            ||:|||.|:..|||||.|:||..:||||..|.:....:|.||:::||:||..::.|..|..::.|
Mosquito    68 QIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHH 132

  Fly   139 NGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDL--------VLNSEDGGDLS 195
            .|..::.||.|:||.|:||:.:||||:|.|.||||||||||..:||        ..|.:.|.||.
Mosquito   133 TGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLQQTPDSDNIDIGIDLQ 197

  Fly   196 DFITNGEWYLLAMPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFT 260
            |:..:.||.::.:|..:|...|:||.|||.||.|.|.:||:||:|..|||:|||.||.:::|.|.
Mosquito   198 DYYISVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFY 262

  Fly   261 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDA 325
            ||.|||||::|.::||||||||..|:||.:|.|             ||||               
Mosquito   263 LPSDSGEKISLCISILLSLTVFFLLLAEIIPPT-------------SLTV--------------- 299

  Fly   326 IPLLGTYFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPPWIKSVFLQWLPWILRMGRPGRK 387
             ||||.|....|.:|..|||:|:.|||.:.|:...|.|.||:..||::.||.:|.:.||.::
Mosquito   300 -PLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVHRVFIELLPKVLCIERPKKE 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:455710 170/386 (44%)
LGIC_ECD_nAChR 55..236 CDD:349798 88/188 (47%)
Cys-loop 154..168 CDD:349798 8/13 (62%)
nAChRalpha1XP_061502948.1 None

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