DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and Chrna5

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_001360830.1 Gene:Chrna5 / 110835 MGIID:87889 Length:467 Species:Mus musculus


Alignment Length:505 Identity:178/505 - (35%)
Similarity:269/505 - (53%) Gaps:93/505 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SCQGPHEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWND 88
            |....||..|...|...|....|||.:.|:.:::||||.:.|::|||||||::|||.||..||.|
Mouse    41 SSAAKHEDSLFRDLFEDYEKWVRPVEHLSDKIKIKFGLAISQLVDVDEKNQLMTTNVWLKQEWID 105

  Fly    89 YNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTYHTNIVVKHNGSCLYVPPGIFKST 153
            ..||||..:|||:|.:|:..:.||.||::::::||..|:|. .|..||::||:..:..|..:||:
Mouse   106 VKLRWNPDDYGGIKIIRVPSDSLWIPDIVLFDNADGRFEGA-STKTVVRYNGTVTWTQPANYKSS 169

  Fly   154 CKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLNSEDGGDLSDFITNGEWYLLAMPGKKNTIVYA 218
            |.||:|:||||.|:|.||||||||||:|:|::|..:| .|.:||..||||.:::..|.|.....:
Mouse   170 CTIDVTFFPFDLQNCSMKFGSWTYDGSQVDIILEDQD-VDRTDFFDNGEWEIMSAMGSKGNRTDS 233

  Fly   219 CCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFL 283
            ||..|.  ||::..|:|..|:|...||:||:.:|.:.::.|.||.:.|||::|..::|:||||||
Mouse   234 CCWYPC--ITYSFVIKRLPLFYTLFLIIPCIGLSFLTVVVFYLPSNEGEKISLCTSVLVSLTVFL 296

  Fly   284 NLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTV 348
            .::.|.:|::|..:|||                             |.|....|..|..|:::||
Mouse   297 LVIEEIIPSSSKVIPLI-----------------------------GEYLVFTMIFVTLSIMVTV 332

  Fly   349 VVLNYHHRTADIHE-MPPWIKSVFLQWLPWILRM-GRPGRKITRKTILLSNRMKELELKERSSKS 411
            ..:|.|||::..|. |.||::.:||..||.:|.| ....|..|::        :|.| |:...||
Mouse   333 FAINIHHRSSSTHNAMAPWVRKIFLHKLPKLLCMRSHADRYFTQR--------EEAE-KDGGPKS 388

  Fly   412 LLANVLDIDDDFRHTISGSQTAIGSSASFGRPTTVEEHHTAIGCNHKDLHLILKELQFITARMRK 476
                        |:|:                      ..|:.|           :::||..:.|
Mouse   389 ------------RNTL----------------------EAALDC-----------IRYITRHVVK 408

  Fly   477 ADDEAELIGDWKFAAMVVDRFCLIVFTLFTIIAT----VTVLLSAPHIIV 522
            .:|..|::.||||.|.|:||..|..|.|.:||.|    |.|:....:|||
Mouse   409 ENDVREVVEDWKFIAQVLDRMFLWTFLLVSIIGTLGLFVPVIYKWANIIV 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 175/498 (35%)
LGIC_ECD_nAChR 55..236 CDD:349798 84/180 (47%)
Chrna5NP_001360830.1 LGIC_ECD 45..251 CDD:355788 94/209 (45%)
Neur_chan_memb 257..445 CDD:367256 76/270 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10642
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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