DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and Chrnb3

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_775304.1 Gene:Chrnb3 / 108043 MGIID:106212 Length:464 Species:Mus musculus


Alignment Length:522 Identity:174/522 - (33%)
Similarity:267/522 - (51%) Gaps:89/522 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LLIFLAIIKE--------------SCQGPHEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQ 64
            |.:|||:...              |....||..||.||...|....|||.|.|:.::|.|||.:.
Mouse     5 LRVFLALSATLSGSWVTLTATAGLSSVAEHEDALLRHLFQGYQKCVRPVLNSSDIIKVYFGLKIS 69

  Fly    65 QIIDVDEKNQILTTNAWLNLEWNDYNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGT 129
            |::|||||||::|||.||..||.|..||||..:|||:..:::....||.||::::.:||..|:|:
Mouse    70 QLVDVDEKNQLMTTNVWLKQEWTDQKLRWNPEDYGGINSIKVPSESLWLPDIVLFENADGRFEGS 134

  Fly   130 YHTNIVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLNSEDGGDL 194
            ..|..:||.:|:..:.||..:||:|.:|:|:||||.|:|.||||||||||..:||:|.:|: .|.
Mouse   135 LMTKAIVKSSGTVSWTPPASYKSSCTMDVTFFPFDKQNCSMKFGSWTYDGTMVDLILINEN-VDR 198

  Fly   195 SDFITNGEWYLL---AMPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMAL 256
            .||..||||.:|   .|.|.:....|:     |..:|::..:||..|:|...||:||:.:|.:.:
Mouse   199 KDFFDNGEWEILNAKGMKGNRREGFYS-----YPFVTYSFVLRRLPLFYTLFLIIPCLGLSFLTV 258

  Fly   257 LGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQ 321
            |.|.||.|.||||:|..::|:||||||.::.|.:|::|..:||||..:|.               
Mouse   259 LVFYLPSDEGEKLSLSTSVLVSLTVFLLVIEEIIPSSSKVIPLIGEYLLF--------------- 308

  Fly   322 VSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHHRTAD-IHEMPPWIKSVFLQWLPWILRMGRPG 385
                          ||..|..|:::||.|:|.|||::. .|.|.||:|.:||:.||..|.|..| 
Mouse   309 --------------IMIFVTLSIIVTVFVINVHHRSSSTYHPMAPWVKRLFLEKLPRWLCMKDP- 358

  Fly   386 RKITRKTILLSNRMKELELKERSSKSLLANVLDIDDDFRHTISGSQTAIGSSASFGRPTTVEEHH 450
                               ::|.|             |........|..|......:.|...:..
Mouse   359 -------------------RDRFS-------------FPDGTESKGTVRGKFPGKKKQTPTSDGE 391

  Fly   451 TAIGCNHKDLHLILKELQFITARMRKADDEAELIGDWKFAAMVVDRFCLIVFTLFTIIATVTVLL 515
            ..:..   .|....:.:::|:..::|....::::.||||.|.|:||..|.:|...:::.:|.:.:
Mouse   392 RVLVA---FLEKASESIRYISRHVKKEHFISQVVQDWKFVAQVLDRIFLWLFLTASVLGSVLIFI 453

  Fly   516 SA 517
            .|
Mouse   454 PA 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 173/520 (33%)
LGIC_ECD_nAChR 55..236 CDD:349798 80/183 (44%)
Chrnb3NP_775304.1 LIC 6..455 CDD:273305 172/519 (33%)
Neur_chan_LBD 35..239 CDD:280998 92/209 (44%)
Neur_chan_memb 246..452 CDD:280999 73/270 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 368..387 3/18 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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