DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha6 and LOC101882637

DIOPT Version :9

Sequence 1:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster
Sequence 2:XP_021324910.1 Gene:LOC101882637 / 101882637 -ID:- Length:540 Species:Danio rerio


Alignment Length:551 Identity:189/551 - (34%)
Similarity:297/551 - (53%) Gaps:85/551 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ASLSLFVLLIFLAIIKESC---QGPHEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIID 68
            ||..|...:.|:.:    |   ||.:..:||..|...|.:..|||.:.:..:.|...:||.||||
Zfish    28 ASFYLIATVGFIPV----CLCAQGRYAFKLLKDLFVNYTSALRPVEDTNNIINVTLQITLSQIID 88

  Fly    69 VDEKNQILTTNAWLNLEWNDYNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTYHTN 133
            :||:||||||..|:...|.|..|.||.|:|.|:..:||..:.:|:|||::||:||:.|..:..||
Zfish    89 MDERNQILTTYLWIRQVWFDAYLTWNTTDYDGLDTIRIPSSYVWRPDVVLYNNADDQFSSSMETN 153

  Fly   134 IVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLNSEDGGDLSDFI 198
            :|::|:|..::..|.|.||:||:|:::||||.|||.:.|||||::|||:|| .|:.|..||:||:
Zfish   154 VVIRHDGQIMWDQPAITKSSCKVDVSFFPFDVQHCRLTFGSWTHNGNQMDL-HNALDSADLADFV 217

  Fly   199 TNGEWYLLAMPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPP 263
            .|.||.:..||.|||.|:|.||.:||.|||:|:.::||..:|.|||::||::||.:|.|||.||.
Zfish   218 ENVEWEVQGMPAKKNVILYGCCSDPYPDITYTLHLKRRASFYIFNLLIPCMMISFLAPLGFYLPA 282

  Fly   264 DSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPL 328
            |||||::||||:||:||||..|||||||.                              |:.:||
Zfish   283 DSGEKVSLGVTVLLALTVFQLLVAESMPP------------------------------SENVPL 317

  Fly   329 LGTYFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPPWIKSVFLQWLP---WILRMG-------- 382
            :|.|:...|.|:.:|..||:.::|.||...:...:|.|.:...|.:|.   ::..||        
Zfish   318 IGKYYIATMTMITASTALTIFIMNIHHCGPEAQPVPSWARRFILNYLARFCFVYDMGQSCVSVHT 382

  Fly   383 -RPGRKITRKTILLSNRMKE--LELKERSSKSLLANVLD-IDDDFRHTISGSQ------------ 431
             :|.:|....||....|.::  |.|.|..|:    .|.| .::|...|:|..|            
Zfish   383 DQPAKKGNNCTINGQARGEDFALRLHEGCSQ----KVKDQFNEDASPTLSPQQRKEHQSGWRIGT 443

  Fly   432 -------TAIGSSASFG--RPTTVEEHHTAIG----CNHKDLHLILKELQFITARMRKADDEAEL 483
                   .:.|::...|  |..:|::....:.    |:.:.|   |:.:::|....::.......
Zfish   444 FVEIEHGESAGATGETGASRKESVKKREILVESQCLCHQQAL---LRNVEYIANFYQEQKATQRR 505

  Fly   484 IGDWKFAAMVVDRFCLIVFTLFTIIATVTVL 514
            ..:|:..|.|:|||.:.:|.:...:.::.::
Zfish   506 NAEWRKVAKVMDRFFMWIFFIMVFLMSLLII 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 187/547 (34%)
LGIC_ECD_nAChR 55..236 CDD:349798 88/180 (49%)
LOC101882637XP_021324910.1 Neur_chan_LBD 30..416 CDD:332142 166/424 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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