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Protein Alignment nAChRalpha6 and si:ch211-256e16.4
DIOPT Version :9
Sequence 1: | NP_995675.1 |
Gene: | nAChRalpha6 / 34304 |
FlyBaseID: | FBgn0032151 |
Length: | 523 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_017210328.1 |
Gene: | si:ch211-256e16.4 / 100333796 |
ZFINID: | ZDB-GENE-131121-267 |
Length: | 179 |
Species: | Danio rerio |
Alignment Length: | 128 |
Identity: | 30/128 - (23%) |
Similarity: | 62/128 - (48%) |
Gaps: | 30/128 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 224 YVD-ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVA 287
|.| :.:.|.|:||.|.:..|:|:|......:.:..:.:..|..:||:..||:||:::|.|.::.
Zfish 4 YADQLIYQITIKRRPLLHVINIILPVFFFLVLDVTSYFIDTDGADKLSFKVTLLLAISVLLLILN 68
Fly 288 ESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVV 350
:::|:|:..:||||: |.:.|..::..|::.|::|
Zfish 69 DTLPSTTYELPLIGI-----------------------------YCSAIFSLIGISILETILV 102
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
nAChRalpha6 | NP_995675.1 |
LIC |
11..517 |
CDD:273305 |
30/128 (23%) |
LGIC_ECD_nAChR |
55..236 |
CDD:349798 |
4/12 (33%) |
si:ch211-256e16.4 | XP_017210328.1 |
None |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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