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Protein Alignment CG17633 and Cpa2

DIOPT Version :9

Sequence 1:	NP_609310.2	Gene:	CG17633 / 34297	FlyBaseID:	FBgn0032144	Length:	430	Species:	Drosophila melanogaster
Sequence 2:	NP_001013101.2	Gene:	Cpa2 / 296959	RGDID:	1305563	Length:	417	Species:	Rattus norvegicus

Alignment Length:	415	Identity:	144/415 - (34%)
Similarity:	227/415 - (54%)	Gaps:	30/415 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly     7 LLFALLAIVASASVSAERVRYDNYRMYKVNSENAKQLEVLKDLEGSSD-SIMFLDGVHLVGADIQ 70
            ||.|||..:.....      :...::.::...:.:|:..|..||.... .:.|.....:.|..:.
  Rat     6 LLAALLGYIYCQET------FVGDQVLEIIPSHEEQIRTLLQLEAEEHLELDFWKSPTIPGETVH 64

  Fly    71 IIV---APHKVPDFLEILGKSEIKYELQSRDVQKSLDEIDEKVAIKGRATTA--YNWAQYYELDD 130
            :.|   :...|..|||..|   |.|.:...|||..||:..|::....:....  :|:..|:.|::
  Rat    65 VRVPFASIQAVKVFLESQG---IDYSIMIEDVQVLLDQEREEMLFNQQRERGGNFNFEAYHTLEE 126

  Fly   131 TYAWLQSLAQTNPGVVTLIEGGKTYQGRSILGVKITKGGETINGKAKPGIFLEAGIHAREWIAPA 195
            .|..:.:|...|||:|:.:..|.:::.|.:..:|.:.||:      ||.|:|:||||||||:..|
  Rat   127 IYQEMDNLVAENPGLVSKVNIGSSFENRPMNVLKFSTGGD------KPAIWLDAGIHAREWVTQA 185

  Fly   196 AATFIINQLLTSEVEN--IKELAENYTWYVLPHANPDGYVYTHTTNRLWRKTRTP-YGS-CFGAD 256
            .|.:..|::.:....:  |..|......::||..||||||::.||||:|||||:. .|| |.|.|
  Rat   186 TALWTANKIASDYGTDPAITSLLNTLDIFLLPVTNPDGYVFSQTTNRMWRKTRSKRSGSGCVGVD 250

  Fly   257 PNRNWGFHWNEVGASSSACSDTYAGPSAFSEIETLSLSKFIEGLKGKVQLYLSLHAYSQYLLYPY 321
            |||||..::...|||||.|||:|.||...||:|..|:..||:. .|||:.:::||:|||.|::||
  Rat   251 PNRNWDANFGGPGASSSPCSDSYHGPKPNSEVEVKSIVDFIKS-HGKVKAFITLHSYSQLLMFPY 314

  Fly   322 GHTSDLPDNVADFEKVFDASIAAVNKRYGTTYTGGNIYDAIYPAAGASVDWAYGTQDVRMAFCYE 386
            |:....||:..:.::|...:..|:.:.:||:|..|.|...||.|:|.|:||||.. .::.:|.:|
  Rat   315 GYKCTKPDDFNELDEVAQKAAQALKRLHGTSYKVGPICSVIYQASGGSIDWAYDL-GIKYSFAFE 378

  Fly   387 LRPSSTSYLTGFKLPAEQIVPASEE 411
            ||.:.   ..||.|||:||:|.:||
  Rat   379 LRDTG---FYGFLLPAKQILPTAEE 400

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.