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Protein Alignment CG17633 and Cpa1

DIOPT Version :9

Sequence 1:	NP_609310.2	Gene:	CG17633 / 34297	FlyBaseID:	FBgn0032144	Length:	430	Species:	Drosophila melanogaster
Sequence 2:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus

Alignment Length:	428	Identity:	145/428 - (33%)
Similarity:	239/428 - (55%)	Gaps:	58/428 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly    11 LLAIVASASVSAERVRYDNYRMYKVNSENAKQLEVLKDLEGSSDSIMFLDGVHL----------V 65
            :|:::..|....|  .:..:::.::::.:..|::.:|:||         |..||          .
  Rat     6 ILSLLLEAVCGNE--NFVGHQVLRISAADEAQVQKVKELE---------DLEHLQLDFWRDAARA 59

  Fly    66 GADIQIIV---APHKVPDFLEILGKSEIKYELQSRDVQKSLDEIDEKV-AIKGRA--TTAYNWAQ 124
            |..|.:.|   :...|..|||..|   |.||:...|||..|||..::: |.:.||  |.::|:|.
  Rat    60 GIPIDVRVPFPSIQSVKAFLEYHG---ISYEIMIEDVQLLLDEEKQQMSAFQARALSTDSFNYAT 121

  Fly   125 YYELDDTYAWLQSLAQTNPGVVTLIEGGKTYQGRSILGVKITKGGETINGKAKPGIFLEAGIHAR 189
            |:.||:.|.::..|...:|.:|:.|:.|.|::||.|..:|.:.||..     :|.|:::.|||:|
  Rat   122 YHTLDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGGTN-----RPAIWIDTGIHSR 181

  Fly   190 EWIAPAAATFIINQL---------LTSEVENIKELAENYTWYVLPHANPDGYVYTHTTNRLWRKT 245
            ||:..|:..:...::         .|:.::|:....|..|       ||||:.|||.|||:||||
  Rat   182 EWVTQASGVWFAKKITKDYGQDPTFTAVLDNMDIFLEIVT-------NPDGFAYTHKTNRMWRKT 239

  Fly   246 RT-PYGS-CFGADPNRNWGFHWNEVGASSSACSDTYAGPSAFSEIETLSLSKFIEGLKGKVQLYL 308
            |: ..|| |.|.||||||...:...||||:.||:||.|....||:|..|:..|:.. .|.::.::
  Rat   240 RSHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSETYRGKFPNSEVEVKSIVDFVTS-HGNIKAFI 303

  Fly   309 SLHAYSQYLLYPYGHTSDLPDNVADFEKVFDASIAAVNKRYGTTYTGGNIYDAIYPAAGASVDWA 373
            |:|:|||.||||||:||:...:.|:.:::..:::.|:...:||.:..|:|.|.||.|:|:::||.
  Rat   304 SIHSYSQLLLYPYGYTSEPAPDQAELDQLAKSAVTALTSLHGTKFKYGSIIDTIYQASGSTIDWT 368

  Fly   374 YGTQDVRMAFCYELRPSSTSYLTGFKLPAEQIVPASEE 411
            | :|.::.:|.:|||.:.   |.||.|||.||:|.:||
  Rat   369 Y-SQGIKYSFTFELRDTG---LRGFLLPASQIIPTAEE 402

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.