DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4017 and Cpa1

DIOPT Version :9

Sequence 1:NP_609309.1 Gene:CG4017 / 34296 FlyBaseID:FBgn0032143 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_058694.2 Gene:Cpa1 / 24269 RGDID:2388 Length:419 Species:Rattus norvegicus


Alignment Length:439 Identity:152/439 - (34%)
Similarity:247/439 - (56%) Gaps:55/439 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKLLLLLLSVNILIFCLAERQRFDNYKVYRVSPVKANQLEGLRSLEANSEDALVLNNLHLG---- 61
            ||.||:|   ::|:..:...:.|..::|.|:|.....|::.::.||.       |.:|.|.    
  Rat     1 MKRLLIL---SLLLEAVCGNENFVGHQVLRISAADEAQVQKVKELED-------LEHLQLDFWRD 55

  Fly    62 ------PTDFLVA-PDFDG--TFLK--------LVKDLDLSPELIDANAQTSLSLDIEPIADANR 109
                  |.|..|. |....  .||:        :::|:.|   |:|...|...:.....::    
  Rat    56 AARAGIPIDVRVPFPSIQSVKAFLEYHGISYEIMIEDVQL---LLDEEKQQMSAFQARALS---- 113

  Fly   110 RSDDYSWSEYHELNDTHRWMQNLVGKYPDVVSVFVAGQSYEGRELLGLRINHNDGRAEKQSIFLE 174
             :|.::::.||.|::.:.:|..||.::|.:||....|.::|||.:..|:.  :.|...:.:|:::
  Rat   114 -TDSFNYATYHTLDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKF--STGGTNRPAIWID 175

  Fly   175 AGMHAREWIGPATATYFANELLSSQQQE-----IMNLARSYVWYILPHANPDGYVYTHKTNRMWR 234
            .|:|:|||:..|:..:||.::.....|:     :::....::..:   .||||:.||||||||||
  Rat   176 TGIHSREWVTQASGVWFAKKITKDYGQDPTFTAVLDNMDIFLEIV---TNPDGFAYTHKTNRMWR 237

  Fly   235 KTRS-PQDKNCVGTDPNRNWDFHWREVGASSDPCSESYAGPKAFSEPEVQTLSQFLKSVPEPMFM 298
            |||| .|...|||.|||||||..:...||||:||||:|.|....||.||:::..|:.|... :..
  Rat   238 KTRSHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSETYRGKFPNSEVEVKSIVDFVTSHGN-IKA 301

  Fly   299 FLSLHSFSQLLLYPYGHTSALPENHRQLEQIFNTAVGAMKRRYGTRYTGGNVYDAIYPAAGSSMD 363
            |:|:||:|||||||||:||....:..:|:|:..:||.|:...:||::..|::.|.||.|:||::|
  Rat   302 FISIHSYSQLLLYPYGYTSEPAPDQAELDQLAKSAVTALTSLHGTKFKYGSIIDTIYQASGSTID 366

  Fly   364 WAYGVLNVKYSFTYELRPSGYSFWTGFRLPAAQIIPTGQETTDSLVEMI 412
            |.|. ..:|||||:|||.:|.   .||.|||:|||||.:||..:|:.::
  Rat   367 WTYS-QGIKYSFTFELRDTGL---RGFLLPASQIIPTAEETWLALLTIM 411

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG4017NP_609309.1 Propep_M14 30..97 CDD:280416 19/87 (22%)
M14_CP_A-B_like 119..415 CDD:199844 124/300 (41%)
Cpa1NP_058694.2 Propep_M14 32..100 CDD:396700 16/77 (21%)
M14_CPA 117..417 CDD:349442 124/305 (41%)
Substrate binding. /evidence=ECO:0000250|UniProtKB:P00730 179..182 1/2 (50%)