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Protein Alignment CG4017 and Cpa2

DIOPT Version :9

Sequence 1:	NP_609309.1	Gene:	CG4017 / 34296	FlyBaseID:	FBgn0032143	Length:	424	Species:	Drosophila melanogaster
Sequence 2:	NP_001019869.1	Gene:	Cpa2 / 232680	MGIID:	3617840	Length:	417	Species:	Mus musculus

Alignment Length:	425	Identity:	157/425 - (36%)
Similarity:	248/425 - (58%)	Gaps:	45/425 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MKLLLLLLSVNILIFCLAERQRFDNYKVYRVSPVKANQLEGLRSLEANSEDALVLNNLHLGPTDF 65
            |:|..||:::...|:|   ::.|...:|..|.|....|::.|..|||  |:.|.|        ||
Mouse     1 MRLTPLLVALFGYIYC---QETFVGDQVLEVIPNDEEQIKTLLQLEA--EEHLEL--------DF 52

  Fly    66 LVAPDFDGTFLKL------VKDLDLSPELIDANAQT-SLSL-DIEPIADANR----------RSD 112
            ..:|......:.:      ::|:.:   .:::...| |:.: |::.:.|..|          |..
Mouse    53 WKSPSVPRQTVHVRVPFASIQDVKV---FLESQGITYSIMIEDVQVLLDQEREEMLFNQQRERGT 114

  Fly   113 DYSWSEYHELNDTHRWMQNLVGKYPDVVSVFVAGQSYEGRELLGLRINHNDGRAEKQSIFLEAGM 177
            ::::..||.|.:.::.|.|||.:.|.:||....|.|:|.|.:..|:.:..   .:|.:|:|:||:
Mouse   115 NFNFGAYHTLEEIYQEMDNLVAENPGLVSKVNIGSSFENRPMNVLKFSTG---GDKPAIWLDAGI 176

  Fly   178 HAREWIGPATATYFANELLSSQQQE--IMNLARSYVWYILPHANPDGYVYTHKTNRMWRKTRSPQ 240
            |||||:..|||.:.||::.|....:  |.:|..:...::||..||||||::..:|||||||||.:
Mouse   177 HAREWVTQATALWTANKIASDYGTDPAITSLLNTLDVFLLPVTNPDGYVFSQTSNRMWRKTRSKR 241

  Fly   241 DKN-CVGTDPNRNWDFHWREVGASSDPCSESYAGPKAFSEPEVQTLSQFLKSVPEPMFMFLSLHS 304
            ..: |||.|||||||.::...||||:|||:||.||...||.||:::..|:||..: :..|::|||
Mouse   242 SGSFCVGVDPNRNWDANFGGPGASSNPCSDSYHGPSPNSEVEVKSIVDFIKSHGK-VKAFITLHS 305

  Fly   305 FSQLLLYPYGHTSALPENHRQLEQIFNTAVGAMKRRYGTRYTGGNVYDAIYPAAGSSMDWAYGVL 369
            :||||::|||:..|.|::..:|:::...|..::||.:||.|..|.:...||.|:|.|:||||. |
Mouse   306 YSQLLMFPYGYKCAKPDDFNELDEVAQRAAQSLKRLHGTSYKVGPICSVIYQASGGSIDWAYD-L 369

  Fly   370 NVKYSFTYELRPSGYSFWTGFRLPAAQIIPTGQET 404
            .:||||.:|||.:||   .||.|||.||:||.:||
Mouse   370 GIKYSFAFELRDTGY---YGFLLPAKQILPTAEET 401

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.