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Protein Alignment CG4017 and Cpb2

DIOPT Version :9

Sequence 1:	NP_609309.1	Gene:	CG4017 / 34296	FlyBaseID:	FBgn0032143	Length:	424	Species:	Drosophila melanogaster
Sequence 2:	NP_446069.1	Gene:	Cpb2 / 113936	RGDID:	71035	Length:	422	Species:	Rattus norvegicus

Alignment Length:	449	Identity:	143/449 - (31%)
Similarity:	224/449 - (49%)	Gaps:	56/449 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MKLLLLLLSVNILIFCLAERQ--RFDNYKVYRVSPVKANQLEGLRSLEANSEDALVLNNLHLGPT 63
            |||..|.:.|.|:::   |:.  .|.:..|....|..:.|::.|::|....|
  Rat     1 MKLYGLGVLVAIILY---EKHGLAFQSGHVLSALPRTSRQVQLLQNLTTTYE------------- 49

  Fly    64 DFLVAPDFDGTFLKLVKDLDLSPELIDANAQTS-----------LSLDIEPIADANRRSDDYS-- 115
             .::.......|::..|::.......|.|:..:           |..::|.:......:|..|
  Rat    50 -VVLWQPVTAEFIEKKKEVHFFVNASDVNSVKAYLNASRIPFNVLMNNVEDLIQQQTSNDTVSPR 113

  Fly   116 -----WSEYHELNDTHRWMQNLVGKYPDVVSVFVAGQSYEGRELLGLRINHNDGRAEKQSIFLEA 175
                 :.:||.||:.:.|::.:..::||::.....|.|||...|..|:::..:.|. |.:|:::.
  Rat   114 ASSSYYEQYHSLNEIYSWIEVITEQHPDMLQKIYIGSSYEKYPLYVLKVSGKEHRV-KNAIWIDC 177

  Fly   176 GMHAREWIGPATATYFANEL--LSSQQQEIMNLARSYVWYILPHANPDGYVYTHKTNRMWRKTRS 238
            |:||||||.||...:|...:  ...::.....|.|...:||:|..|.|||.||.|.||||||.||
  Rat   178 GIHAREWISPAFCLWFIGYVTQFHGKENTYTRLLRHVDFYIMPVMNVDGYDYTWKKNRMWRKNRS 242

  Fly   239 PQDKN-CVGTDPNRNW-DFHWREVGASSDPCSESYAGPKAFSEPEVQTLSQFLKSVPEPMFMFLS 301
            ....| |||||.|||: ..||.|.||||..|||:|.|....|||||:.::.||:.....:..::|
  Rat   243 VHMNNRCVGTDLNRNFASKHWCEKGASSFSCSETYCGLYPESEPEVKAVADFLRRNINHIKAYIS 307

  Fly   302 LHSFSQLLLYPYGHTSALPENHRQLEQIFNTAVGAMKR-RYGTRYTGGNVYDAIYPAAGSSMDWA 365
            :||:||.:|:||.:..:..::|.:|..:.:.||.|::. ...||||.|:..:::|.|.|.|.||.
  Rat   308 MHSYSQQILFPYSYNRSKSKDHEELSLVASEAVRAIESINKNTRYTHGSGSESLYLAPGGSDDWI 372

  Fly   366 YGVLNVKYSFTYELRPSG-YSFWTGFRLPAAQIIPTGQETTDSLVEMIKAAAQIEGYKI 423
            |. |.:|||||.|||.:| |    ||.||...|.||       ..|.:.|.::|..:.|
  Rat   373 YD-LGIKYSFTIELRDTGRY----GFLLPERFIKPT-------CAEALAAVSKIAWHVI 419

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.