DRSC/TRiP Functional Genomics Resources

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Protein Alignment zf30C and CG8478

DIOPT Version :9

Sequence 1:NP_477301.1 Gene:zf30C / 34292 FlyBaseID:FBgn0270924 Length:777 Species:Drosophila melanogaster
Sequence 2:NP_001163576.1 Gene:CG8478 / 41194 FlyBaseID:FBgn0037746 Length:576 Species:Drosophila melanogaster


Alignment Length:609 Identity:126/609 - (20%)
Similarity:193/609 - (31%) Gaps:210/609 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 TCGQPEYDSPGSSDGMKKHKAFRKKDRNRDS-----------------------------DDEDT 192
            |.|:|:.:||        .:.|.|...||.:                             ||::.
  Fly    88 TIGEPDQNSP--------LRPFDKSILNRHNALCSTPSKGNISTETQTPQIMESIDLTQIDDKEN 144

  Fly   193 TSEESEDSDDDIPLASRLKTKLKQESQNSDSGDECPDFEPNNSEDDA---DASGFQLPPPAMVKV 254
            |..|....|:....:|...|....::....:||...|   |.|..:|   .|.....|..|.|.:
  Fly   145 TQPEGCGGDNSTLSSSVDVTANTVKANTLKTGDATMD---NVSLQEAAKTPAPSQVYPLSANVVL 206

  Fly   255 EAFDEEDFEYQDASMYVK--------TESTDIFSNEKDKLLDVLLNEGDGLKPFES-LKVEQG-- 308
            |...|...|  ..||.|.        ....::.:...:.:...|....|.:||..| ||||.|  
  Fly   207 ENITEVSNE--GVSMLVSPAGAEKEVAHVNEVVNEVSELIAKALKISADSVKPATSKLKVEAGKK 269

  Fly   309 -AGILDEIAAVPLVEVAEEDVLELRGHQMEKPPGPRKRGRPP----------KEKIPVVKR---- 358
             ..:....:...|                   |.||:...|.          |:::.||.:    
  Fly   270 RQSMSSTYSGAAL-------------------PRPRRSYLPTTTAETRTYSFKQRMSVVVKTTLN 315

  Fly   359 -KYRKRNAPRSPSPDDSSGTPKRVAKISKKELKERLKMINKMEKSWKCPHCVKIYHIRKPYEKHL 422
             ..|||:.....|....|..|  |:|::|..:::.|.:.:                :|.|     
  Fly   316 SPARKRSVGGGVSLSRRSCLP--VSKLTKSSIRKSLAVTS----------------VRSP----- 357

  Fly   423 RDDHKLNEAEMKEIFKDVDVHAKLDEEVFKCPICSKIYLVEKRLVTHMKVHG--EDGKLTFK--- 482
               .|:.....|...|.:      .|:||.|..||..:.|:..|..||::|.  ::|..|.|   
  Fly   358 ---EKIASKPAKTSTKSI------PEKVFSCKNCSTTFRVKSLLDVHMRMHDPVDNGANTLKRLN 413

  Fly   483 ------------CPCYCNLFFATKEQATEHARAQHKELLYCEKCDKYMTGHDSLKNHERNFHSKK 535
                        |. :|:..||.:       ||.|..|:  :.|||.                  
  Fly   414 SNPVAAGVSKNRCK-FCDKNFALE-------RALHIHLM--QNCDKI------------------ 450

  Fly   536 EPRSQQRNLICDKCGKKFTGRTSLSDHVRSDCGRLPLYGCSVCGKHLSTAGILKTHMLLHKAD-- 598
             |.|::|.|       :||.    .:|.:.  .:||..|        .|:||.....:..|..  
  Fly   451 -PPSEKRKL-------EFTE----LNHEKK--AQLPKIG--------GTSGINHPMTMPQKPQQR 493

  Fly   599 -------TPYQCDKCGKTFKVKAQYK--SHLKTRHTDYKPYKCHLCPKEYPYRESLLTH-MTVHT 653
                   .|.|..:......||...|  :|.....|..|...||:|.:.:........| :|||.
  Fly   494 ISTIPKLAPSQGTQSMAPPSVKKIPKNVAHAGVYRTPTKTVPCHICKQSFRSILEFTNHSLTVHG 558

  Fly   654 GIKRFLCNNCGKRFTCISNLQ-AH 676
                   ||..|:.|...:.| ||
  Fly   559 -------NNQLKKMTGREDAQSAH 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zf30CNP_477301.1 C2H2 Zn finger 33..53 CDD:275368
C2H2 Zn finger 61..82 CDD:275368
C2H2 Zn finger 98..117 CDD:275368
C2H2 Zn finger 134..152 CDD:275368
C2H2 Zn finger 511..532 CDD:275370 3/20 (15%)
COG5048 <523..>672 CDD:227381 33/160 (21%)
C2H2 Zn finger 546..566 CDD:275368 3/19 (16%)
C2H2 Zn finger 575..595 CDD:275368 3/19 (16%)
C2H2 Zn finger 603..624 CDD:275368 4/22 (18%)
C2H2 Zn finger 632..652 CDD:275368 5/20 (25%)
C2H2 Zn finger 660..680 CDD:275368 7/18 (39%)
CG8478NP_001163576.1 zf-C2H2 377..399 CDD:278523 8/21 (38%)
C2H2 Zn finger 379..399 CDD:275368 7/19 (37%)
C2H2 Zn finger 426..444 CDD:275368 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24409
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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