DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Apoltp and Ccnf

DIOPT Version :9

Sequence 1:NP_995670.2 Gene:Apoltp / 34283 FlyBaseID:FBgn0032136 Length:4333 Species:Drosophila melanogaster
Sequence 2:XP_038941012.1 Gene:Ccnf / 117524 RGDID:67401 Length:818 Species:Rattus norvegicus


Alignment Length:675 Identity:139/675 - (20%)
Similarity:214/675 - (31%) Gaps:240/675 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  2915 RNTQNFNLTGEL--HSRATLKAQDFKVV-AIH-------PNRAVV-LSTKYEDVSPEVVRHHSKL 2968
            ||....:|..::  |....|...|...| |:|       .|.|.| .|..::::.|.    ...|
  Rat    66 RNLTILSLPEDVLFHILKWLSVGDILAVRAVHSHLKYLVDNHASVWASASFQELWPS----PQNL 126

  Fly  2969 ELSETAWIGYNLELGNFS---KVG-----NESQSFALEIFYPKRNLSSSGQYYMTD-TNFNSDLS 3024
            :|.|.|     .|.|||.   |:|     ||..|.:.|.......|.:|..:.|.: .|..|| .
  Rat   127 KLFERA-----AEKGNFEAAVKLGIAYLYNEGLSVSDEACAEVNGLKASRFFSMAERLNTGSD-P 185

  Fly  3025 FQWLGGNYDQQP---------KIIHSNLQ--------WKAEPLH--------RGDREHRTIALTV 3064
            |.||   :.:.|         .::|.:|:        .||..||        ..|.|.|    ..
  Rat   186 FIWL---FIRPPWSVSGSCCKAVVHDSLRAECQLQRSHKASILHCLGRVLNLFEDEEKR----KQ 243

  Fly  3065 AHPLLEKDIN--CKATYYRGLRDLLRTHLTIDYSEYPDQLIELGAQLTDRYSELGHTNYTFHVYG 3127
            ||.|.|:..:  |.|:.|.    |..:...:|.|: |.:.:....:|.| |:..|...... ...
  Rat   244 AHNLFEESAHQGCLASSYL----LWESDRKVDMSD-PGRCLHSFRKLRD-YAAKGCWEAQL-ALA 301

  Fly  3128 KHIASELDVQLNGTLAAMNSYYKTESTAHYKRDIFPARYGKFLALLDVNKRELEYERQSPFHAVR 3192
            |..|....:.|.|...       :||....           |.|...|||:::        .:|:
  Rat   302 KACAGGSQLGLEGKAC-------SESVCQL-----------FQASQAVNKQQI--------FSVQ 340

  Fly  3193 LHLLPTIRYPIYGLNATIWDTPDTNHSGYIYMDILERYARM-DF-----NLTEDASQNLQMVGYI 3251
            ..|..|:|                    ||.:|.|...|.| ||     :||.:.          
  Rat   341 KGLSDTMR--------------------YILIDWLVEVATMKDFTSLCLHLTVEC---------- 375

  Fly  3252 PDTRSAFLDIWRNYEEIRVIDVSSYLKMNHSRLITGRFHWRPSIRQEVREKIQAVGKS---VYSS 3313
                                 |..||:   .||:.             |.|:|.:|.:   :.:.
  Rat   376 ---------------------VDRYLR---RRLVP-------------RYKLQLLGIACMVICTR 403

  Fly  3314 FSEGIDFWIKSIYTETTESMGVVWNTAKEYN-RDFIDDIGQ-LSVLEEDLADLRLFVNQSYEAND 3376
            |          |..|.......||.|...|. .|.:..:|: :|.||..:.              
  Rat   404 F----------ISKEILTIREAVWLTDNTYKYEDLVRVMGEIISALEGKIR-------------- 444

  Fly  3377 FYIKNVVNFTLTILDELAIRDHIESLPKIFSELWQAMGDSGKALRNSIVWLIETIKTTY--NNLL 3439
              |..||::...:|..:.:....:.|.....||                .|:.|..:.|  ..|.
  Rat   445 --IPTVVDYKEVLLTLVPVAPRTQHLCSFLCEL----------------TLLHTSLSVYAPARLA 491

  Fly  3440 DA---VARFFHGESLVYISGLLEKGIAKYDSF---IKDLHIKFIKYIENLWHKTWTLAENHWK-- 3496
            .|   :||..||.:..:.:.|.:.....|...   :..||.|       .:|..   |...::  
  Rat   492 SAALLLARLMHGHTQPWTTQLWDLTGFSYSDLTPCVLSLHKK-------CFHDD---APKDYRQV 546

  Fly  3497 ---AVLKRFEPHLFKMISFIETTAW 3518
               ||.:|||...::.||..|..::
  Rat   547 SLTAVKQRFEDKCYEEISQEEVLSY 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ApoltpNP_995670.2 LPD_N 49..633 CDD:214755
DUF1943 665..1012 CDD:286281
DUF1081 1029..1122 CDD:283982
VWD 3741..3908 CDD:295339
C8 3951..4014 CDD:285899
CcnfXP_038941012.1 FBOX 73..111 CDD:197608 9/37 (24%)
CYCLIN_CCNF_rpt1 345..439 CDD:410225 31/170 (18%)
CYCLIN_CCNF_rpt2 467..578 CDD:410226 27/131 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9078
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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