DRSC/TRiP Functional Genomics Resources

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Protein Alignment gcm and GCM1

DIOPT Version :9

Sequence 1:NP_001260292.1 Gene:gcm / 34277 FlyBaseID:FBgn0014179 Length:504 Species:Drosophila melanogaster
Sequence 2:XP_016866879.1 Gene:GCM1 / 8521 HGNCID:4197 Length:498 Species:Homo sapiens


Alignment Length:493 Identity:153/493 - (31%)
Similarity:231/493 - (46%) Gaps:107/493 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 TKSRVAIDWDINDSKMP-SVGEFDDFNDWSNGHCRLIYSVQSDEARKHASGWAMRNTNNHNVNIL 89
            ::.:..:.|||||.|:| :|.:.|.|.:|.:.:.:.|||.:...|::|.|.||||||||||..||
Human    70 SEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWAMRNTNNHNSRIL 134

  Fly    90 KKSCLGVLLCSAKCKLPNGASVHLRPAICDKARRKQQGKQCPNRNCNGRLEIQACRGHCGYPVTH 154
            |||||||::|...|....|..::||||||||||:|||.|:||  ||:|.|::..||||.|:|||:
Human   135 KKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCP--NCDGPLKLIPCRGHGGFPVTN 197

  Fly   155 FWRRDGNGIYFQAKGTHDHPRPEAKGSTEARRLLAGGRRVRSLAVMLARESALSDKLSSLRPTKR 219
            |||.||..|:||:||.||||:||.|...||||.:   ::|.:      ..|::|..|      |.
Human   198 FWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAM---KKVNT------APSSVSLSL------KG 247

  Fly   220 QAKTQSIQESKRRRMGASDVLETKQELVVPPTTY---LPTSTPTHST-----NFNQSQGSYVPAG 276
            ..:|:|: ..:.:..|:..:..:.||.|..|.:|   |..:||..::     :|::|.|.   .|
Human   248 STETRSL-PGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDCFSFSKSYGL---GG 308

  Fly   277 QGSVISQWN----------REIH----YETED--PCYANGMYSYDMLHSPLSAHSSTGSYYQENK 325
            ...:..|.:          |::.    |.:.|  |..|:|:||.   |..|.|.|...:..:.: 
Human   309 ITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASGVYSD---HGDLQAWSKNAALGRNH- 369

  Fly   326 PQQLQHSQYQQQLSPQQHVPVSYDPSQPISSSLQCGMPSYEICDDTSSLTSSSGYCSEDYGYYNG 390
               |..:.|.....|....|.|:.|||..|......:|    .:..::.|.    |...:     
Human   370 ---LADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLP----LEPPAAKTG----CPPLW----- 418

  Fly   391 YLPNSLDVSNGSQSQNLSQDASFYTTSSEIFSVFESTLNGGGTSGVDLIYDEATAYQQHQQQGTF 455
              ||        .:.||.::        ::...|.|             |.::.||...|:.   
Human   419 --PN--------PAGNLYEE--------KVHVDFNS-------------YVQSPAYHSPQED--- 449

  Fly   456 PHLTNYQQEPQDQMQSADYYYSNTGVDNSWNIQMDATY 493
            |.|..|...|..|       ||.....:.|:.:.:.||
Human   450 PFLFTYASHPHQQ-------YSLPSKSSKWDFEEEMTY 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gcmNP_001260292.1 GCM 47..186 CDD:281598 78/138 (57%)
GCM1XP_016866879.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165145948
Domainoid 1 1.000 208 1.000 Domainoid score I2859
eggNOG 1 0.900 - - E1_28MJ9
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003094
OrthoInspector 1 1.000 - - mtm8555
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12414
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4583
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
98.830

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