DRSC/TRiP Functional Genomics Resources

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Protein Alignment gcm and gcm1

DIOPT Version :9

Sequence 1:NP_001260292.1 Gene:gcm / 34277 FlyBaseID:FBgn0014179 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_001016915.1 Gene:gcm1 / 549669 XenbaseID:XB-GENE-1015329 Length:387 Species:Xenopus tropicalis


Alignment Length:427 Identity:148/427 - (34%)
Similarity:205/427 - (48%) Gaps:99/427 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PVPSPPATKSRVAIDWDINDSKMPSVGEFDD-FNDWSNGHCRLIYSVQSDEARKHASGWAMRNTN 82
            |..:.|.:|..   :|||||.|:|...|..| |.:|.:.:.:.|||..:..|::|.|||||||||
 Frog     3 PEHTSPESKGS---NWDINDMKLPQDPEQTDWFQEWPDSYVKHIYSSSNRNAQRHLSGWAMRNTN 64

  Fly    83 NHNVNILKKSCLGVLLCSAKCKLPNGASVHLRPAICDKARRKQQGKQCPNRNCNGRLEIQACRGH 147
            |||..||||||||||:||..|.:|:|..|:||||||||||:|||.|.||  ||:|.|::.:||||
 Frog    65 NHNSRILKKSCLGVLVCSNDCTVPDGRKVYLRPAICDKARQKQQSKHCP--NCSGPLKLISCRGH 127

  Fly   148 CGYPVTHFWRRDGNGIYFQAKGTHDHPRPEAKGSTEARRLLAGGRRVRSLAV------------- 199
            .|:|||:|||.:|..||||.||.||||:||.|..:|:|::   |.:.|:..|             
 Frog   128 GGFPVTNFWRHEGPYIYFQTKGVHDHPKPETKLESESRKV---GHKKRNAIVTTKLGLKRSRNDE 189

  Fly   200 MLARESALSDKLSSLRPTKRQAKTQS-IQESKRRRMGASDVLETKQELVVPPTTYLPTSTPTHST 263
            .|..|.|..:.||:   |.....||: :.:.|...|   |..||:..|          :...:|.
 Frog   190 ALTGEKADQENLSN---TPLDQDTQAMLYDLKDMEM---DNSETENIL----------NNCLNSY 238

  Fly   264 NF----------------------NQSQGSYVPAGQGSVISQWNREIHYETEDPCYANGMYSYDM 306
            ||                      ||::.:....|:.|.    ..|..:.:||....|.::....
 Frog   239 NFEKDLNQLENISDLEWSKNLSRDNQNESNQCIGGELSS----TMEFDFYSEDQQMWNKVFIAKN 299

  Fly   307 LH-SPLSAHSSTGSYYQENKPQQLQHSQYQQQLSPQQHVPVSYDPSQPISSSLQCGMPSYEI-CD 369
            .| .||.      :...|..|.|..|..|.||:|             .:..|:..|:.:::. .|
 Frog   300 QHMQPLE------NLCWEKSPLQSCHGLYNQQIS-------------NVEPSIIDGLLNFKSNAD 345

  Fly   370 D----------TSSLTSSSGY--CSEDYGYYNGYLPN 394
            |          .:|.:||:.|  |.|| .|...|.||
 Frog   346 DVHEGMLHVNHNNSASSSAVYRLCQED-SYLFRYNPN 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gcmNP_001260292.1 GCM 47..186 CDD:281598 82/139 (59%)
gcm1NP_001016915.1 GCM 29..166 CDD:281598 82/138 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 200 1.000 Domainoid score I2981
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003094
OrthoInspector 1 1.000 - - mtm9448
Panther 1 1.100 - - O PTHR12414
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.010

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