DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gcm and Gcm2

DIOPT Version :9

Sequence 1:NP_001260292.1 Gene:gcm / 34277 FlyBaseID:FBgn0014179 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_001099575.1 Gene:Gcm2 / 291047 RGDID:1311127 Length:504 Species:Rattus norvegicus


Alignment Length:518 Identity:169/518 - (32%)
Similarity:228/518 - (44%) Gaps:122/518 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MPVPMPVPSPPATKSRVAIDWDINDSKMP-SVGEFDDFNDWSNGHCRLIYSVQSDEARKHASGWA 77
            ||........|.....:.:.|||||.:|| ....||.|.:|.:|:.|.|||.|..:|::|.||||
  Rat     1 MPADSMQDPDPVLSYGMKLTWDINDPQMPQEPAHFDHFREWPDGYVRFIYSSQEKKAQRHLSGWA 65

  Fly    78 MRNTNNHNVNILKKSCLGVLLCSAKCKLPNGASVHLRPAICDKARRKQQGKQCPNRNCNGRLEIQ 142
            ||||||||.:|||||||||::|:..|.|.:|:.:.||||||||||.|||.|.||  ||:..||:.
  Rat    66 MRNTNNHNGHILKKSCLGVVVCARACALKDGSHLQLRPAICDKARLKQQKKACP--NCHSALELV 128

  Fly   143 ACRGHCGYPVTHFWRRDGNGIYFQAKGTHDHPRPEAKGSTEARRLLAGGRRVRSLAVMLARESAL 207
            .||||.|||||:|||.|||.|:|||||.|||||||:|..||.||                  |||
  Rat   129 PCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEGRR------------------SAL 175

  Fly   208 SDKLSSL-RPTKRQA---KTQSIQESKRRRMGASDVLETKQELVVPPTTYLPTSTPTHST-NFNQ 267
            ..:::|. :|.||::   :..|.|:: |....::.|.|..:...:|..|..|.|  .||: :|..
  Rat   176 KRQMASFYQPQKRRSEEPEAGSTQDT-RGHSNSTPVPEPSELFAMPADTSFPIS--GHSSLSFPN 237

  Fly   268 SQGSYV----PAGQGSVISQWNREIHYETEDPCYANGMYSYDMLHSPLSAHSSTGSYYQENKPQQ 328
            |....|    |...|.||..:.:   |......:....:||:     |::...|||         
  Rat   238 SDVHRVTCDLPTFPGDVILPFQK---YSNPSIYFPGPPWSYE-----LASPGVTGS--------- 285

  Fly   329 LQHSQYQQQLSPQQHVPVSYDPSQPISSSLQCGMPSYEICDDTSSLTSSSGYCSEDYGYYNGYLP 393
               |.|.........||  .||.....:|||..:.||...:.:..||:.          |:|:.|
  Rat   286 ---SPYPTLYKDPSIVP--DDPDWIHLNSLQYNVSSYGSYERSLDLTAR----------YHGWKP 335

  Fly   394 NSLDVSNG------------------SQSQNLSQDASFYTTSSEIFSVFESTLNGGGTSGVDLIY 440
                 ::|                  |...||.....:...:.            .||..:..:.
  Rat   336 -----THGKAGLEEKVDCRPCQAVPTSPYYNLELPCRYLPVAP------------AGTQALQTVI 383

  Fly   441 DEATAYQQHQQQGTFPHLTNYQQEPQDQMQSADYYYSNTGVDNSWNIQMDATYHPVNSTDPIY 503
            ....|||.:|.    |.|.:     .|.:|......|             .||...|...|||
  Rat   384 TTTVAYQAYQH----PALKH-----GDSVQEVSSLAS-------------CTYASENLPMPIY 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gcmNP_001260292.1 GCM 47..186 CDD:281598 88/138 (64%)
Gcm2NP_001099575.1 GCM 35..172 CDD:281598 88/138 (64%)
FAM76 <164..>244 CDD:292665 25/100 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339671
Domainoid 1 1.000 202 1.000 Domainoid score I2892
eggNOG 1 0.900 - - E1_28MJ9
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 219 1.000 Inparanoid score I3479
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003094
OrthoInspector 1 1.000 - - mtm9031
orthoMCL 1 0.900 - - OOG6_107695
Panther 1 1.100 - - O PTHR12414
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4579
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.750

Return to query results.
Submit another query.