DRSC/TRiP Functional Genomics Resources

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Protein Alignment numb and ldlrap1

DIOPT Version :10

Sequence 1:NP_523523.2 Gene:numb / 34263 FlyBaseID:FBgn0002973 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001017114.1 Gene:ldlrap1 / 549868 XenbaseID:XB-GENE-954261 Length:309 Species:Xenopus tropicalis


Alignment Length:189 Identity:49/189 - (25%)
Similarity:83/189 - (43%) Gaps:29/189 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 MDRLRRSFRDSFRRRKDRVPESSK-----------PHQWQADEEAVRSATCSFSVKYLGCVEVFE 95
            ||.|:.:.|...|.     |..:|           |..|....|.:... .||.:||||...|.:
 Frog     1 MDALKSAGRAIIRS-----PSIAKQSWGGGKHKKLPENWTDTRETLLEG-MSFHLKYLGMTLVEQ 59

  Fly    96 SRGMQVCEEALK----VLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVSFCAPDRNH 156
            .:|.::...|:|    ..:.|.::..:.:|.||..|:.:.|..:..||.:.:|.::|:|..|:.|
 Frog    60 PKGEELSATAVKRIVATAKASGKKLQKVILKVSPRGIILYDLASNQLIENVSIYRISYCTADKMH 124

  Fly   157 ERGFSYICRDGTTRRWMCHGFLACK-DSGERLSHAVGCAFAVCL-------ERKQRRDK 207
            ::.|:||.:........||.||..| ...:.::..|..||.|..       |.|::|:|
 Frog   125 DKVFAYIAQSQQNETLECHAFLCTKRKMAQAVTLTVAQAFKVAFEFWQVSRENKEKREK 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
numbNP_523523.2 PTB_Numb 67..201 CDD:241298 37/145 (26%)
NumbF 269..374 CDD:461874
ldlrap1NP_001017114.1 PTB_LDLRAP-mammal-like 43..165 CDD:269981 33/122 (27%)
Blue background indicates that the domain is not in the aligned region.

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