DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment numb and ced-6

DIOPT Version :9

Sequence 1:NP_001260291.1 Gene:numb / 34263 FlyBaseID:FBgn0002973 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001246225.1 Gene:ced-6 / 35971 FlyBaseID:FBgn0029092 Length:533 Species:Drosophila melanogaster


Alignment Length:599 Identity:102/599 - (17%)
Similarity:196/599 - (32%) Gaps:181/599 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 HEPLERGFTRGKFGDVKNGKSASFRFSKKSPKKMDRLRRSFRDS-------------FRRRKDRV 60
            ::|...|.|.|  |.....|.|..:|..|......:.:...:|:             .....|..
  Fly    19 YQPANSGGTSG--GSKAAAKMAQLKFWNKQNSSKQQQQDKDKDAADGGNNTSGGGTGSNSNGDAK 81

  Fly    61 PESSK-PHQWQADEEAVRSATCSFSVKYLGCVEVFESRGMQVCEEALKVLR--QSRRRPVRGL-- 120
            .|:.. ...|....|.:.|....:.||:.|.:.|.:.:|::|.:||::.|:  |..::...|.  
  Fly    82 SEAKNGKRNWLHTPEQLISGHAVYLVKFFGNLSVDQPKGIEVVKEAIRKLQFAQQMKKAETGTQE 146

  Fly   121 ------LHVSGDGLRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFSYICR-------------- 165
                  :.:|..|:.:.:..|..::....:..:|:||.::..::.||:|.:              
  Fly   147 KFKKLEITISIKGVAIQEPRTHKILHQFPLYNISYCADEKGVKKFFSFIAKTVKTQDGSDPTSNG 211

  Fly   166 ------DGTTR---RWMCHGFLACKDSGERLSHAVGCAFAVCLERKQRRDKECGVTMTFDTKNST 221
                  ||:.:   ...|..|::.|.:.: ::..:|.||.:...:.        :..|..|..|.
  Fly   212 HANGNGDGSAKVEESHECFVFISNKLASD-ITLTIGQAFDLAYRKY--------MDSTEKTNLSK 267

  Fly   222 FTRTGSFRQQTLT---ERLAMATVGTNERSVD------GPGSAMPGPPAATVKPFNPFAIERPHA 277
            ..:..:..|||:.   |||...:....:..:|      |....:..|   |.:|.|...:.....
  Fly   268 AQQQINHLQQTVNVYKERLREVSAKLPKAELDALLFNLGIKDILEAP---TTEPQNGIEVASEAL 329

  Fly   278 TPNMLE------------------RQSSFRLSTIGSQSPFKRQMSL-------RINDLPSNADRQ 317
            :...|:                  ..||| |..:..::....|:|:       ::::|..|:|..
  Fly   330 SNGKLDDDKLLIDTNSTTASTHSASPSSF-LPIVPPRNNLSSQISIGGKSNSQKMDELLLNSDSD 393

  Fly   318 RAFLTAAAGNPMQTPLRSVSPIAEVSPAKSAGADPLSAAAVAADSVSQLCQELSQGLSLLTQTDA 382
            ..|      :|.....:.:......:.:...|.:|       |:|..|.....:....|.....:
  Fly   394 SDF------DPRADETQEIGGTGRSAISNMFGFEP-------ANSFGQHLFSNNNDHKLQNNNSS 445

  Fly   383 LLAAGEDLNFNNNRSINQNIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQS 447
            ||..      :||.|||.:..::|..:      .||.....|::                     
  Fly   446 LLIT------SNNNSINSSGFSSELNI------TPPLLAPPPKI--------------------- 477

  Fly   448 IETSTELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGGGGPD----DPFDAE 508
                                   |||:         |..::.:|.|.   .|..|    |||:..
  Fly   478 -----------------------AAPR---------RLNSVTTGNGL---NGNTDLFGSDPFELN 507

  Fly   509 WVANVAAAKQLSPD 522
            ...|:....||:.|
  Fly   508 NGPNIFKQNQLNLD 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
numbNP_001260291.1 PTB_Numb 67..201 CDD:241298 31/166 (19%)
NumbF 269..374 CDD:283874 17/129 (13%)
ced-6NP_001246225.1 PTB_CED-6 92..261 CDD:269971 30/177 (17%)
AceK 233..>304 CDD:295079 14/79 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438631
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11232
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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