DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment numb and Dab1

DIOPT Version :9

Sequence 1:NP_001260291.1 Gene:numb / 34263 FlyBaseID:FBgn0002973 Length:556 Species:Drosophila melanogaster
Sequence 2:XP_017448664.1 Gene:Dab1 / 266729 RGDID:628770 Length:588 Species:Rattus norvegicus


Alignment Length:623 Identity:129/623 - (20%)
Similarity:224/623 - (35%) Gaps:164/623 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 KKSPKKMDRLRRSFRDSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCVEVFESRGMQ 100
            |.|.||         ||.::.:|| .|::...:::.  |.||     :..|.:|..||..:||.:
  Rat    12 KTSAKK---------DSRKKGQDR-SEATLIKRFKG--EGVR-----YKAKLIGIDEVSAARGDK 59

  Fly   101 VCEEALKVL-------RQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVSFCAPDRNHER 158
            :|::::..|       |.......:..|.:|..|:::.|::|..|.....:.::|:.|.|....|
  Rat    60 LCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHR 124

  Fly   159 GFSYIC-RDGTTRRWMCHGFLACK--DSGERLSHAVGCAFAVCLERKQR--------RDKEC--G 210
            .|.|:| ::|.      |.|:|.|  .:.|.:...:...|.:..|.|||        :||:|  .
  Rat   125 AFGYVCGKEGN------HRFVAIKTAQAAEPVILDLRDLFQLIYELKQREELEKKAQKDKQCEQA 183

  Fly   211 VTMTF---DTKNSTFT----RTG--SFRQQTLTERLAMATVGTNERSV-DGPGSAMPGPPAATVK 265
            |..|.   |.::..:.    ..|  ..|.....|.:........:..| |.|.|    .|.:..:
  Rat   184 VYQTILEEDVEDPVYQYIVFEAGHEPIRDPETEENIYQVPTSQKKEGVYDVPKS----QPVSNSQ 244

  Fly   266 PFNPFAIERPHATPN---------MLERQSSF-RLSTIGSQS-------------PFKRQMSLRI 307
            |...|......||||         :||...:. :|...|..|             |....:....
  Rat   245 PLEDFEARFAAATPNGNLSMDFDELLEATKAVTQLELFGDMSTPPDITSPPTPATPGDAFLPAPS 309

  Fly   308 NDLPSNAD--RQRAFLTAAAGN----------------PM---QTPLRSVSPIAEVSPAKSAGAD 351
            ..||.:||  ...:|.|||..:                |:   |..:.:..|:|:|.|    ||.
  Rat   310 QTLPGSADVFGSMSFGTAAVPSGYVAMGAVLPSFWGQQPLVQQQIAMGAQPPVAQVIP----GAQ 370

  Fly   352 PLS-----------------------AAAVAADSVSQLCQELSQG----LSLLTQTDALLAAGED 389
            |::                       ||.:...:|..|...:.||    |:.:..|:        
  Rat   371 PIAWGQPGLFPATQQPWPTVAGQFPPAAFMPTQTVMPLPAAMFQGPLTPLATVPGTN-------- 427

  Fly   390 LNFNNNRSINQNIIAAEKQVQHVH-----SYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQSIE 449
               ::.||..|:....:|..:.:.     :..||.....|...|.|.|     |::.|.....:.
  Rat   428 ---DSARSSPQSDKPRQKMGKEMFKDFQMAQPPPVPSRKPDQPSLTCT-----SEAFSSYFNKVG 484

  Fly   450 TSTELPNAEQW-LGHV----VRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGGGGPDDPFDAEW 509
            .:.:..:.:.: :..:    |.||:|:....||   ...|..:.:..:.:.|.....||.|:..:
  Rat   485 VAQDTDDCDDFDISQLNLTPVTSTTPSTNSPPT---PAPRQSSPSKSSASHVSDPTADDIFEEGF 546

  Fly   510 VANVAAAKQLSPDLPIPSTARSPLARHSTNPF---ISP 544
            .:...:.:|.:||....|:...|....|..|.   |||
  Rat   547 ESPSKSEEQEAPDGSQASSTSDPFGEPSGEPSGDNISP 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
numbNP_001260291.1 PTB_Numb 67..201 CDD:241298 32/143 (22%)
NumbF 269..374 CDD:283874 34/175 (19%)
Dab1XP_017448664.1 PTB_Dab 25..174 CDD:269926 39/162 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334823
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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