DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment numb and num-1

DIOPT Version :9

Sequence 1:NP_001260291.1 Gene:numb / 34263 FlyBaseID:FBgn0002973 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001129904.1 Gene:num-1 / 180367 WormBaseID:WBGene00003830 Length:682 Species:Caenorhabditis elegans


Alignment Length:609 Identity:205/609 - (33%)
Similarity:278/609 - (45%) Gaps:149/609 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VKNGKSASFRFSKKSPKKMDRLRRSFRDSFRRRKDR---------VPESSKPHQWQADEEAVRSA 79
            :.|.||:.|      .|.|||||||.|.. ::|:||         |...||..|||.||.|||:.
 Worm   136 IPNDKSSIF------SKGMDRLRRSLRLP-KKRRDRSHDRHLSPDVTGGSKTEQWQPDEGAVRTG 193

  Fly    80 TCSFSVKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDD-ETKGLIVDQT 143
            ||.|:|||||.|||:|||||||||.|||.|:.|||:||:.:|:||||||||||. .::||:||||
 Worm   194 TCCFNVKYLGSVEVYESRGMQVCEGALKSLKASRRKPVKAVLYVSGDGLRVVDQGNSRGLLVDQT 258

  Fly   144 IEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLERKQRRDKE 208
            |||||||||||..::||:||||||.:||||||||||.|::||||||||||||::|||:|:|||:|
 Worm   259 IEKVSFCAPDRQTDKGFAYICRDGASRRWMCHGFLATKETGERLSHAVGCAFSICLEKKKRRDEE 323

  Fly   209 CGVTMTFDTKNSTF---------------TRTGSFRQQTLTERLAMA------TVGTNERSVDGP 252
            .........:.||.               |..|:..|.....|..:|      .|...:|.:|..
 Worm   324 TAQVNVQSAQESTSSTPPKDIFHPNWEDNTSEGTSTQNPSNSRSNLAYQSFRKHVSIEDRYLDPQ 388

  Fly   253 GSAMPGPPAAT-VKPFNPFAIERPHATPNMLERQSSFRL--STIGSQSPFKRQMSLRI--NDLPS 312
            ...:...||:. :......:..||...|.:..||.|.|.  ....|...|||.||||.  |:...
 Worm   389 SVIINEVPASNHMDEIRRISKPRPTGNPALFLRQGSLRAPPDMPSSSDQFKRNMSLRTVSNNPTE 453

  Fly   313 NADRQRAFLTAAAGNPMQTPLRSVSPIAEVSPAKSAGADPLSAAAVAADSVSQLCQELSQGLSL- 376
            .:..:::|.|.....|:.                ....|||                   ||.: 
 Worm   454 RSPEKKSFGTQLYNEPIY----------------EGDEDPL-------------------GLGIT 483

  Fly   377 ---LTQTDALLA----AGEDLNFNN---------NRSINQNIIAAEKQVQHVHSYAPPTAQVTPR 425
               :|:|...|:    .|.:||:.:         ..:.|.:.:||..|    ::...||.....:
 Worm   484 PPVVTKTSGSLSNNGLDGINLNWKSIPAPVHQMQQHNANGDFVAAWPQ----NTIEKPTVGPLDK 544

  Fly   426 VASTTPTYQTLHSQSPSRSEQSIETSTELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLAS 490
            :..   .::.:...|.|..|   .|.|....|::||..|:|.:...:|..|:       :...::
 Worm   545 LQK---QFEDIKLISISSGE---NTPTTRSKADEWLDDVLRVSMSMSPTSPS-------SDPPST 596

  Fly   491 GTGAAVGGGGPDDPFDAEWVANVAAAKQLSPDLPI-------------------PSTARSPLA-- 534
            .:.:.:...|| .|..|            .|.||:                   .||..||..  
 Worm   597 SSYSVLPKSGP-PPAHA------------PPPLPVRQAVSNGSPSIYQQQLQQANSTRNSPAGIN 648

  Fly   535 -RHSTNPF-IS-PPKAPAQSFQVQ 555
             ..|.||. || ||..|...|.||
 Worm   649 WNSSPNPMKISQPPAKPVDPFDVQ 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
numbNP_001260291.1 PTB_Numb 67..201 CDD:241298 98/134 (73%)
NumbF 269..374 CDD:283874 22/108 (20%)
num-1NP_001129904.1 PTB_Numb 181..316 CDD:241298 98/134 (73%)
NumbF 410..>445 CDD:368837 13/34 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157403
Domainoid 1 1.000 197 1.000 Domainoid score I1819
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 250 1.000 Inparanoid score I2006
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110016at2759
OrthoFinder 1 1.000 - - FOG0003748
OrthoInspector 1 1.000 - - oto19489
orthoMCL 1 0.900 - - OOG6_108078
Panther 1 1.100 - - LDO PTHR11232
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2695
SonicParanoid 1 1.000 - - X2613
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.930

Return to query results.
Submit another query.