DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment numb and numbl

DIOPT Version :9

Sequence 1:NP_001260291.1 Gene:numb / 34263 FlyBaseID:FBgn0002973 Length:556 Species:Drosophila melanogaster
Sequence 2:XP_002938862.4 Gene:numbl / 100488844 XenbaseID:XB-GENE-961776 Length:588 Species:Xenopus tropicalis


Alignment Length:646 Identity:221/646 - (34%)
Similarity:300/646 - (46%) Gaps:189/646 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 MDRLRRSFRDSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCVEVFESRGMQVCEEAL 106
            |::||:|.|   |::...|||:|:||||.|||||||...|||.|:|||.|||.|||||.|||:|:
 Frog     1 MNKLRQSLR---RKKPTYVPEASRPHQWGADEEAVRRGKCSFPVRYLGHVEVEESRGMHVCEDAV 62

  Fly   107 KVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFSYICRDGTTRR 171
            |.|:...::.|:.:|.||.||||||||:||.||||||||||||||||||.::.||||||||||||
 Frog    63 KKLKTLGKKSVKAILWVSADGLRVVDDKTKDLIVDQTIEKVSFCAPDRNFDKAFSYICRDGTTRR 127

  Fly   172 WMCHGFLACKDSGERLSHAVGCAFAVCLERKQRRDKECGVTMTFDTKNSTFTRTGSFR-----QQ 231
            |:||.|:|.||||||||||||||||.||||||:|:||||||.:||...::|.|.||||     ||
 Frog   128 WICHCFMALKDSGERLSHAVGCAFAACLERKQKREKECGVTASFDASRTSFAREGSFRVTSASQQ 192

  Fly   232 TLTERLAMATVGTNERSVDGPG--SAMP--GPPAATVKPFNP--------------------FAI 272
            ...|.: |..:...:::...|.  |::|  |.|:..|.|..|                    .||
 Frog   193 AEREEV-MRQLQDKKKAEAAPSLTSSIPAVGAPSNPVLPAQPDQSPPQCATVPSEKSETGGQHAI 256

  Fly   273 ERPHATPNMLERQSSFRLSTIGSQ--SPFKRQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRS 335
            .|.||....|.||.|||.....||  ||||||:|||:|:|||...|             :|..:.
 Frog   257 PRRHAPLEQLVRQGSFRGFPALSQKNSPFKRQLSLRLNELPSTLQR-------------KTNFQD 308

  Fly   336 VSPIAEVSPAKSAGADPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLNFNNNRSINQ 400
            .|.:.|:.          |:....:|.::.||.:::...:.....|..      .|.|..|:.:.
 Frog   309 KSQVIELE----------SSMHPDSDGINDLCNQINSSFANKPSEDPF------ANSNGTRTPST 357

  Fly   401 NIIA--AEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQSIETSTELPNAEQW--- 460
            ...|  ..:.:|.:..:|..|:.....|.     :|..|.::||.:|:.:|...:...|:|.   
 Frog   358 GPAAPLPPQPMQGISGWAEQTSTSAAAVG-----FQMGHRRTPSEAERWLEEVAKAAKAQQQQPP 417

  Fly   461 ----------------------------LG-----HVVRSTSPAAPKRPT--------------- 477
                                        :|     |:..:..|.|...||               
 Frog   418 PQPMVAVPMPVPAAVQAYPVSYDAATAPVGMFITPHMQAAYVPVAGYNPTMSYPAPSVPVVGITP 482

  Fly   478 --YLANVGRAQTLASGT-------------------------------GAAVGGGGPDDP----- 504
              .:|||..:.|....|                               |.|.|...|.||     
 Frog   483 SQMVANVFCSATQVPSTNLANKSNPFPQSILQTSNASAQPSQMGPKPNGTANGTSWPPDPSQLRL 547

  Fly   505 ---------FDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPFISPPKAPAQSFQVQL 556
                     |:|:|.|             :.|.::..||    |||.:..:   ::||::|
 Frog   548 ASTAQEVDQFEAQWAA-------------LESKSQQRLA----NPFSNELQ---KTFQIEL 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
numbNP_001260291.1 PTB_Numb 67..201 CDD:241298 98/133 (74%)
NumbF 269..374 CDD:283874 35/126 (28%)
numblXP_002938862.4 PTB_Numb 23..157 CDD:241298 98/133 (74%)
PHA03247 <206..563 CDD:223021 79/390 (20%)
NumbF 255..337 CDD:399368 34/104 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 189 1.000 Domainoid score I3225
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 302 1.000 Inparanoid score I2629
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110016at2759
OrthoFinder 1 1.000 - - FOG0003748
OrthoInspector 1 1.000 - - otm48696
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2695
SonicParanoid 1 1.000 - - X2613
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.090

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