DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mco1 and LPR2

DIOPT Version :10

Sequence 1:NP_609287.3 Gene:Mco1 / 34258 FlyBaseID:FBgn0032116 Length:959 Species:Drosophila melanogaster
Sequence 2:NP_565008.1 Gene:LPR2 / 843444 AraportID:AT1G71040 Length:581 Species:Arabidopsis thaliana


Alignment Length:647 Identity:129/647 - (19%)
Similarity:211/647 - (32%) Gaps:236/647 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 ERSITVVNRMMPGPAIEVCEGDEIVVDVKNHLL-------------------GESTSIHWH-GLH 340
            :||.||     |||.||...|.:..|..:|||.                   |..|.:|.| |:|
plant    97 KRSATV-----PGPTIEAVYGVDTYVTWRNHLPLHHILPWDPTISPAIPKHGGIPTVVHLHGGIH 156

  Fly   341 QKKTPYMDGVPHITQCPITPHATFRYSFPADLS---------------GTHFWHSH-TGMQRGD- 388
            :   |..||         ...:.|...|....|               |..::|.| .|:.|.: 
plant   157 E---PTSDG---------NADSWFTAGFKETGSKWTKKTTHYVNKQQPGNMWYHDHAAGLTRVNL 209

  Fly   389 --GVFGALIIRKPKTAE----PHGGLYDFDLSEHVMIVQDWIHDTGASIFSYHHHSRGDN----- 442
              |:.|:.|:|......    |.|..:|     ..:::.|.......||:.   ::.|:|     
plant   210 LAGLLGSYILRHSSVESPLRLPTGREFD-----RPLVIFDRSFRKDGSIYM---NATGNNPTIHP 266

  Fly   443 --KPH----NLLVNGKGRYYNRIWAEAKQAHRRAEERTTQPVEP-----LPKSQVDFVQTLPRQA 496
              :|.    .::||||.      |.......|:...|.|.....     ...:.:||:......|
plant   267 QWQPEYFGDAIIVNGKA------WPRLTVRRRKYRFRITNASNARFFRFFFSNGLDFIVVGSDSA 325

  Fly   497 RLAKTNTTKLFPVNSRQKRGNLNEIPLELVPHQIYTVRRGFRYRFRIINAEYLNCPIVVSIDGHN 561
            .|||..:||                .:.|.|.:|..|                   :|......:
plant   326 YLAKPVSTK----------------SVLLAPSEIVDV-------------------LVDFSKSTS 355

  Fly   562 LTAINSDGFDIEAMDVGSIVTYSGERFDFVLNANLEVGNYWIRLKGLMDCSEVFTSAFQVAILRY 626
            .|||           :.:...|.....|.|...|.:|..:.|..|     |||.||.....::.|
plant   356 KTAI-----------LANNAPYPYPSGDPVTEENSKVMKFIINYK-----SEVDTSIIPKKLIEY 404

  Fly   627 EGAPDEEPTAELSYGHKAEGIELNVMNRGPGYPDTKTVAEMRALPIYDHVSGIDHDTLKPEADYK 691
                   |.|.:|                       |....|.:.::::||.||    :|...|.
plant   405 -------PPAHVS-----------------------TSTRTRYIAMFEYVSSID----EPTHLYI 435

  Fly   692 FFIYYDFYTKNNPDFHDKDLYAMDMEMTQQNRLYTPQLNHITLNFPSLALLPSRSQLKDSDFCNE 756
            ..:.|:......|.....:::.: :.:|:.|.   |...|:.|    ..:|...:.:|..:|   
plant   436 NGLPYNAPVTETPKIGTSEVWEV-INLTEDNH---PLHIHLGL----FKVLEQTALVKSEEF--- 489

  Fly   757 TSLMDQGIDC---RQEFCKCHHVLQVPLGAVVEMIIVDEGFQYYANHPFHLHGNAFRVMGLERLG 818
                   |:|   |.:..|| .:.:...|....:.:.:.|::           |.|::|     .
plant   490 -------IECMTKRNDAVKC-EISKYARGNKTAVTVHERGWK-----------NVFKMM-----P 530

  Fly   819 ENVTVEMIKQLDQFNLLKRNLDNPPVKDTVTIPDGGYTIIRFEAS-NPGYWLFHCHIEFHAE 879
            .:||    |.|.:|:.:..|              ..|:   |:|: .||| ::||||..|.:
plant   531 GHVT----KILVRFSYIHSN--------------ESYS---FDATQEPGY-VYHCHILDHED 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco1NP_609287.3 VWC 150..212 CDD:214564
CuRO_1_tcLCC2_insect_like 293..397 CDD:259927 34/139 (24%)
CuRO_2_tcLCC_insect_like 415..626 CDD:259951 42/226 (19%)
CuRO_3_tcLLC2_insect_like 728..897 CDD:259972 32/156 (21%)
LPR2NP_565008.1 SufI 86..580 CDD:441735 129/647 (20%)
Blue background indicates that the domain is not in the aligned region.

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