DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Eaat1 and slc1a2

DIOPT Version :9

Sequence 1:NP_001369123.1 Gene:Eaat1 / 34251 FlyBaseID:FBgn0026439 Length:523 Species:Drosophila melanogaster
Sequence 2:XP_004913402.1 Gene:slc1a2 / 100494868 XenbaseID:XB-GENE-1005169 Length:572 Species:Xenopus tropicalis


Alignment Length:545 Identity:211/545 - (38%)
Similarity:323/545 - (59%) Gaps:47/545 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TRPKQDGGKFKAFMQENVLTMATVIGVFVGGLIGFIIKNSTGEWSKREIMYISFPGEIFLRMLKC 66
            |||:....:....::.|:|...||.||.:|.:.|.:::.:: ......:|.|:|||:|.:||||.
 Frog    32 TRPRSPCLRICDKIRGNLLLSLTVFGVIMGAVSGGLLRMAS-PIHPDIVMVIAFPGDILMRMLKM 95

  Fly    67 LIVPLLVSSITSAIGGLDLSMSSKIATRAITYYFVTTISAVILGICLVTTLRPGQGAKIVETQTE 131
            ||:||::||:.:.:.|||...|.::.|||:.||..|||.|.|||:.||..:.||...  ::.|..
 Frog    96 LILPLIISSLITGLAGLDAKSSGRLGTRAMIYYMSTTIIAAILGVILVLAIHPGDPK--LKKQLG 158

  Fly   132 SIDKASKVLTPDTLMDLVRNMFTDNIIQSTMFQHRTEIYENTSISPAQPMEN------------- 183
            ...:..:|.:.|..:||:||:|.:|::|:...|.:|...:....:|.:...|             
 Frog   159 KGQENDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVVVEAPTEEPSNVTDSVFALMNDTV 223

  Fly   184 ----------WEFKSAQREGSNVLGLVMFSVILGTTIGRMREKGQLLQDFFTTLSEAMMTITSWV 238
                      .|||    :|.||||::.|.:..|..:|:|.|:.:|:.:||..|:|.:|.:.:.:
 Frog   224 ATTTEEIRKKLEFK----DGMNVLGVIGFFIAFGIAMGKMGEQARLMVEFFNILNEIVMKLVTMI 284

  Fly   239 IWISPLGVAFLIAAKIIEMESIAATIQSLGWYFITVMIGLFLHGFGTIAVIFFLGTRRLPYRYIA 303
            :|.||||:|.||..|||.::.:....:.||.|.:||::||.:||...:.:::|:.||:.|:.::|
 Frog   285 MWYSPLGIACLICGKIIAIKDLELVARQLGMYMVTVIVGLIIHGAIFLPLLYFVITRKSPFTFLA 349

  Fly   304 KLSQVLATAFGTGSSSATMPLTIKCL-DNMGIDPRVTRFVIPVGATINMDGTALYEAVAALFIAQ 367
            .:.|...||.||.||:.|:|:|.:|| :|:|||.||||||:|||||||||||||||||||:||||
 Frog   350 GVFQAWITALGTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQ 414

  Fly   368 YREMSYSFGTIVAVSITATAASIGAAGIPQAGLVTMVMVLDTVGLEPKDVSLIIAVDWLLDRFRT 432
            ...:....|.|:.||:|||.||:|||.||.||||||:::|..|||..:|:||::||||||||.||
 Frog   415 MNGVILDGGQIITVSLTATLASVGAASIPSAGLVTMLLILTAVGLPTQDISLLVAVDWLLDRMRT 479

  Fly   433 TINVMCDALGTILVNHLSKNDLASVDRLNAEPHELLEL--------GPNGHEMKEXRQSSLGAYN 489
            ::||:.|:.|..:|.||||.:|.|:|:.:|  |:.:|:        ....|......|....|:|
 Frog   480 SVNVVGDSFGAGIVYHLSKAELESLDKQHA--HQEIEMTKTQSIYDDMKNHRENNSNQCIYAAHN 542

  Fly   490 RKRXVDMSRLWACFHILPSNDSDSD 514
            .....|      |...|.:|...:|
 Frog   543 SVPVDD------CKVTLANNGKTAD 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eaat1NP_001369123.1 SDF 20..449 CDD:395299 188/452 (42%)
slc1a2XP_004913402.1 SDF 50..496 CDD:366058 188/452 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1184392at2759
OrthoFinder 1 1.000 - - FOG0000144
OrthoInspector 1 1.000 - - otm49148
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X191
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.010

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